Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0048981 Rosa chinensis HOM05D003555 ORTHO05D004542 2.0e-65 252.3 127 100.0
RcHm_v2.0_Chr2g0176361 Rosa chinensis HOM05D003555 ORTHO05D004542 1.3e-35 153.3 126 69.0
FAN02G1454 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.6e-35 152.9 126 67.5
Prupe.3G312200 Prunus persica HOM05D003555 ORTHO05D004542 3.7e-35 151.8 126 67.5
Sabra16G0204700 Salix brachista HOM05D003555 ORTHO05D004542 6.2e-35 151.0 137 59.1
FvH4_6g54180 Fragaria vesca HOM05D003555 ORTHO05D004542 1.1e-34 150.2 126 65.9
FAN09G3428 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.1e-34 150.2 126 65.9
FAN14G0379 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.1e-34 150.2 126 65.9
MD09G1004500 Malus domestica HOM05D003555 ORTHO05D004542 1.1e-34 150.2 126 66.7
MD17G1008500 Malus domestica HOM05D003555 ORTHO05D004542 1.1e-34 150.2 126 66.7
FAN05G2121 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.1e-34 148.7 126 65.9
Haze_14935 Corylus avellana HOM05D003555 ORTHO05D004542 5.3e-34 147.9 126 64.3
Manes.04G091900 Manihot esculenta HOM05D003555 ORTHO05D004542 5.3e-34 147.9 126 64.3
Thecc.04G045300 Theobroma cacao HOM05D003555 ORTHO05D004542 9.0e-34 147.1 126 64.3
CANSAT64G0789 Cannabis sativa HOM05D003555 ORTHO05D004542 2.0e-33 146.0 126 65.1
Glyma.16G146600 Glycine max HOM05D003555 ORTHO05D004542 2.0e-33 146.0 126 65.1
Gorai.012G082900 Gossypium raimondii HOM05D003555 ORTHO05D004542 2.6e-33 145.6 126 62.7
arahy.Tifrunner.gnm1.ann1.N4MBCZ Arachis hypogaea HOM05D003555 ORTHO05D004542 3.4e-33 145.2 126 64.3
Cpa.g.sc70.83 Carica papaya HOM05D003555 ORTHO05D004542 3.4e-33 145.2 126 62.7
Duzib187G1504 Durio zibethinus HOM05D003555 ORTHO05D004542 4.5e-33 144.8 126 62.7
TWI60G1549 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 4.5e-33 144.8 126 63.5
Cfa007176 Carpinus fangiana HOM05D003555 ORTHO05D004542 5.8e-33 144.4 126 64.3
CiPaw.04G001900 Carya illinoinensis HOM05D003555 ORTHO05D004542 5.8e-33 144.4 126 63.5
Gohir.A05G334700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 5.8e-33 144.4 126 62.7
THA.LOC104805306 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 5.8e-33 144.4 126 63.5
arahy.Tifrunner.gnm1.ann1.HQ0MCX Arachis hypogaea HOM05D003555 ORTHO05D004542 7.6e-33 144.1 126 63.5
Ciclev10015638m.g Citrus clementina HOM05D003555 ORTHO05D004542 9.9e-33 143.7 126 61.9
Glyma.02G065500 Glycine max HOM05D003555 ORTHO05D004542 9.9e-33 143.7 126 64.3
QL02p062748 Quercus lobata HOM05D003555 ORTHO05D004542 9.9e-33 143.7 126 63.5
Atru.chr6.2636 Acer truncatum HOM05D003555 ORTHO05D004542 1.3e-32 143.3 126 63.5
COL.COLO4_10540 Corchorus olitorius HOM05D003555 ORTHO05D004542 1.7e-32 142.9 126 62.7
Lalb_Chr14g0363981 Lupinus albus HOM05D003555 ORTHO05D004542 2.9e-32 142.1 126 63.5
PGR083G2609 Punica granatum HOM05D003555 ORTHO05D004542 3.8e-32 141.7 128 64.1
Duzib264G0281 Durio zibethinus HOM05D003555 ORTHO05D004542 4.9e-32 141.4 126 61.1
Hma1.2p1_1187F.1_g265130 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 4.9e-32 141.4 126 62.7
Hma1.2p1_1187F.1_g265140 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 4.9e-32 141.4 126 62.7
Lj5A90G23 Lonicera japonica HOM05D003555 ORTHO05D004542 4.9e-32 141.4 126 62.7
ClCG01G008140 Citrullus lanatus HOM05D003555 ORTHO05D004542 6.4e-32 141.0 126 63.5
TAR629G2425 Trochodendron aralioides HOM05D003555 ORTHO05D004542 6.4e-32 141.0 126 62.7
PSO478G0165 Papaver somniferum HOM05D003555 ORTHO05D004542 8.4e-32 140.6 125 62.4
Lj1g0000762 Lotus japonicus HOM05D003555 ORTHO05D004542 1.1e-31 140.2 126 61.9
TWI34G1938 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 1.1e-31 140.2 125 62.4
TAR374G1733 Trochodendron aralioides HOM05D003555 ORTHO05D004542 1.1e-31 140.2 126 61.1
Sed0000891 Sechium edule HOM05D003555 ORTHO05D004542 1.4e-31 139.8 126 62.7
THA.LOC104823995 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 1.4e-31 139.8 126 61.1
MELO3C025061.2 Cucumis melo HOM05D003555 ORTHO05D004542 1.9e-31 139.4 126 62.7
CsaV3_5G020170 Cucumis sativus L. HOM05D003555 ORTHO05D004542 1.9e-31 139.4 126 62.7
Dinv23202 Davidia involucrata HOM05D003555 ORTHO05D004542 1.9e-31 139.4 126 62.7
Phvul.004G070900 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 1.9e-31 139.4 126 63.5
THA.LOC104825653 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 1.9e-31 139.4 126 61.9
VMungo0464G0001 Vigna mungo HOM05D003555 ORTHO05D004542 1.9e-31 139.4 125 62.4
VMungo1383G1114 Vigna mungo HOM05D003555 ORTHO05D004542 1.9e-31 139.4 126 61.1
Gohir.D04G073600 Gossypium hirsutum HOM05D003555 ORTHO05D004542 2.4e-31 139.0 126 61.9
Duzib147G0304 Durio zibethinus HOM05D003555 ORTHO05D004542 3.2e-31 138.7 126 59.5
Gohir.A11G063400 Gossypium hirsutum HOM05D003555 ORTHO05D004542 3.2e-31 138.7 126 61.1
Gohir.D11G067700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 3.2e-31 138.7 126 61.1
Gorai.007G072500 Gossypium raimondii HOM05D003555 ORTHO05D004542 3.2e-31 138.7 126 61.1
Potri.017G061100 Populus trichocarpa HOM05D003555 ORTHO05D004542 4.2e-31 138.3 126 59.5
Glyma.16G050200 Glycine max HOM05D003555 ORTHO05D004542 5.5e-31 137.9 126 59.5
DCAR_016355 Daucus carota HOM05D003555 ORTHO05D004542 7.1e-31 137.5 127 61.4
Sed0008328 Sechium edule HOM05D003555 ORTHO05D004542 7.1e-31 137.5 126 61.9
Eucgr.G01949 Eucalyptus grandis HOM05D003555 ORTHO05D004542 9.3e-31 137.1 129 62.0
Glyma.19G101000 Glycine max HOM05D003555 ORTHO05D004542 9.3e-31 137.1 127 61.4
Actinidia36835 Actinidia chinensis HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 61.9
AL1G24480 Arabidopsis lyrata HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BcaB03g13163 Brassica carinata HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BcaC05g25110 Brassica carinata HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BcaC07g40270 Brassica carinata HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BcaC07g41676 Brassica carinata HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
A06p08830 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
A08p32590 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
A09p63580 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
C08p15700 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
C08p33730 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BolC8t49197H Brassica oleracea HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BolC8t50972H Brassica oleracea HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BraA06t24078Z Brassica rapa HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BraA08t35183Z Brassica rapa HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 59.5
TAR622G0101 Trochodendron aralioides HOM05D003555 ORTHO05D004542 1.2e-30 136.7 126 61.9
AT1G12840 Arabidopsis thaliana HOM05D003555 ORTHO05D004542 1.6e-30 136.3 126 59.5
CARHR013160 Cardamine hirsuta HOM05D003555 ORTHO05D004542 1.6e-30 136.3 126 59.5
Lalb_Chr24g0403201 Lupinus albus HOM05D003555 ORTHO05D004542 1.6e-30 136.3 126 61.1
Potri.001G322500 Populus trichocarpa HOM05D003555 ORTHO05D004542 1.6e-30 136.3 126 58.7
vmacro19161 Vaccinium macrocarpon HOM05D003555 ORTHO05D004542 1.6e-30 136.3 126 61.9
Thhalv10007948m.g Eutrema salsugineum HOM05D003555 ORTHO05D004542 2.1e-30 136.0 126 59.5
MBI07_g40357_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 2.7e-30 135.6 124 60.5
Phvul.001G086700 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 2.7e-30 135.6 126 60.3
Rhsim08G0195300 Rhododendron simsii HOM05D003555 ORTHO05D004542 2.7e-30 135.6 126 61.9
Actinidia25536 Actinidia chinensis HOM05D003555 ORTHO05D004542 3.5e-30 135.2 126 59.5
CDE05G2896 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 4.6e-30 134.8 125 56.8
Carub.0001s1258 Capsella rubella HOM05D003555 ORTHO05D004542 6.0e-30 134.4 126 59.5
MBI11_g08158_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 6.0e-30 134.4 126 58.7
GSVIVG01008626001 Vitis vinifera HOM05D003555 ORTHO05D004542 6.0e-30 134.4 126 59.5
Actinidia18318 Actinidia chinensis HOM05D003555 ORTHO05D004542 7.9e-30 134.0 126 59.5
BcaB08g34247 Brassica carinata HOM05D003555 ORTHO05D004542 7.9e-30 134.0 126 57.9
DCAR_021412 Daucus carota HOM05D003555 ORTHO05D004542 7.9e-30 134.0 128 59.4
Dinv11219 Davidia involucrata HOM05D003555 ORTHO05D004542 7.9e-30 134.0 126 60.3
Sp1g11410 Schrenkiella parvula HOM05D003555 ORTHO05D004542 7.9e-30 134.0 125 59.2
Cc05_g01690 Coffea canephora HOM05D003555 ORTHO05D004542 1.3e-29 133.3 128 58.6
Eucgr.G01943 Eucalyptus grandis HOM05D003555 ORTHO05D004542 1.3e-29 133.3 129 60.5
TPR.G17457 Trifolium pratense HOM05D003555 ORTHO05D004542 1.3e-29 133.3 128 60.2
GSVIVG01033006001 Vitis vinifera HOM05D003555 ORTHO05D004542 1.3e-29 133.3 126 58.7
Psat0s1497g0040 Pisum sativum HOM05D003555 ORTHO05D004542 1.8e-29 132.9 128 60.2
ATR0582G027 Amborella trichopoda HOM05D003555 ORTHO05D004542 2.3e-29 132.5 126 54.8
CSS0013918 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 3.0e-29 132.1 126 59.5
CSS0044185 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 3.0e-29 132.1 126 59.5
Sc13g0008590 Simmondsia chinensis HOM05D003555 ORTHO05D004542 3.9e-29 131.7 126 57.1
BcaC05g25150 Brassica carinata HOM05D003555 ORTHO05D004542 8.7e-29 130.6 128 57.8
C05p10440 Brassica napus HOM05D003555 ORTHO05D004542 8.7e-29 130.6 128 57.8
BolC5t29790H Brassica oleracea HOM05D003555 ORTHO05D004542 8.7e-29 130.6 128 57.8
Nn4g22182 Nelumbo nucifera HOM05D003555 ORTHO05D004542 8.7e-29 130.6 124 58.1
Sabra17G0054300 Salix brachista HOM05D003555 ORTHO05D004542 8.7e-29 130.6 126 57.9
Medtr7g083720 Medicago truncatula HOM05D003555 ORTHO05D004542 1.5e-28 129.8 128 59.4
CDE05G1333 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 1.9e-28 129.4 125 53.6
Ah.07g207280 Amaranthus hybridus HOM05D003555 ORTHO05D004542 2.5e-28 129.0 126 57.9
Ca_08125_v3 Cicer arietinum L. HOM05D003555 ORTHO05D004542 2.5e-28 129.0 128 59.4
Nitab4.5_0005207g0040 Nicotiana tabacum HOM05D003555 ORTHO05D004542 2.5e-28 129.0 127 59.1
AUR62021202 Chenopodium quinoa HOM05D003555 ORTHO05D004542 3.3e-28 128.6 126 56.3
HanXRQChr16g0528421 Helianthus annuus HOM05D003555 ORTHO05D004542 3.3e-28 128.6 126 54.8
AUR62015995 Chenopodium quinoa HOM05D003555 ORTHO05D004542 4.3e-28 128.3 126 57.9
Peaxi162Scf00171g01130 Petunia axillaris HOM05D003555 ORTHO05D004542 4.3e-28 128.3 127 58.3
Aa31LG1G1920 Aethionema arabicum HOM05D003555 ORTHO05D004542 5.6e-28 127.9 126 56.3
HPP92_022913 Vanilla planifolia HOM05D003555 ORTHO05D004542 5.6e-28 127.9 126 54.0
Solyc03g097800.4 Solanum lycopersicum HOM05D003555 ORTHO05D004542 7.4e-28 127.5 127 58.3
Sopen03g028540 Solanum pennellii HOM05D003555 ORTHO05D004542 7.4e-28 127.5 127 58.3
Nitab4.5_0007858g0030 Nicotiana tabacum HOM05D003555 ORTHO05D004542 9.6e-28 127.1 127 58.3
Migut.D01225 Erythranthe guttata HOM05D003555 ORTHO05D004542 1.3e-27 126.7 128 58.6
Zm00001eb297260 Zea mays HOM05D003555 ORTHO05D004542 1.6e-27 126.3 129 55.0
CAN.G637.54 Capsicum annuum HOM05D003555 ORTHO05D004542 2.8e-27 125.6 127 57.5
Oeu058121.1 Olea europaea HOM05D003555 ORTHO05D004542 2.8e-27 125.6 126 57.9
Os05g0593100 Oryza sativa ssp. japonica HOM05D003555 ORTHO05D004542 2.8e-27 125.6 129 54.3
CAN.G257.127 Capsicum annuum HOM05D003555 ORTHO05D004542 3.7e-27 125.2 128 57.0
Ah.13g068520 Amaranthus hybridus HOM05D003555 ORTHO05D004542 4.8e-27 124.8 126 56.3
Actinidia08900 Actinidia chinensis HOM05D003555 ORTHO05D004542 6.2e-27 124.4 128 57.0
ECA232G4336 Erigeron canadensis HOM05D003555 ORTHO05D004542 6.2e-27 124.4 128 55.5
Nn5g27103 Nelumbo nucifera HOM05D003555 ORTHO05D004542 6.2e-27 124.4 122 57.4
unitig_61.g26203 Utricularia gibba HOM05D003555 ORTHO05D004542 6.2e-27 124.4 128 57.8
Zm00001eb163710 Zea mays HOM05D003555 ORTHO05D004542 6.2e-27 124.4 129 54.3
MSTRG.22881 Avicennia marina HOM05D003555 ORTHO05D004542 1.8e-26 122.9 128 56.2
SGA_v2.0_scaffold14G07035 Striga asiatica HOM05D003555 ORTHO05D004542 1.8e-26 122.9 128 57.0
EL10Ac3g05664 Beta vulgaris HOM05D003555 ORTHO05D004542 2.4e-26 122.5 126 54.0
Lsat_1_v5_gn_4_84140 Lactuca sativa HOM05D003555 ORTHO05D004542 2.4e-26 122.5 126 53.2
Lsat_1_v5_gn_6_50360 Lactuca sativa HOM05D003555 ORTHO05D004542 2.4e-26 122.5 126 53.2
Hund11754 Selenicereus undatus HOM05D003555 ORTHO05D004542 2.4e-26 122.5 126 54.0
Hund04735 Selenicereus undatus HOM05D003555 ORTHO05D004542 5.3e-26 121.3 126 54.0
SalBow1G4818 Salvia bowleyana HOM05D003555 ORTHO05D004542 6.9e-26 120.9 127 55.9
Zm00001eb345260 Zea mays HOM05D003555 ORTHO05D004542 6.9e-26 120.9 129 53.5
MSTRG.11256 Avicennia marina HOM05D003555 ORTHO05D004542 2.6e-25 119.0 128 54.7
SEGI_35214 Sequoiadendron giganteum HOM05D003555 ORTHO05D004542 2.7e-22 109.0 124 49.2
Mapoly0126s0013 Marchantia polymorpha HOM05D003555 ORTHO05D004542 2.5e-20 102.4 125 46.4
Nn3g16313 Nelumbo nucifera HOM05D003555 ORTHO05D004542 1.1e-18 97.1 122 45.9
CSS0036109 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 5.3e-18 94.7 68 75.0
Manes.11G078200 Manihot esculenta HOM05D003555 ORTHO05D004542 3.4e-17 92.0 63 74.6
AagrBONN_evm.TU.Sc2ySwM_228.2553 Anthoceros agrestis HOM05D003555 ORTHO05D004542 5.9e-17 91.3 126 40.5
VMungo0331G0161 Vigna mungo HOM05D003555 ORTHO05D004542 2.9e-16 89.0 62 72.6
COL.COLO4_13344 Corchorus olitorius HOM05D003555 ORTHO05D004542 6.5e-16 87.8 126 44.4
SMO200G0006 Selaginella moellendorffii HOM05D003555 ORTHO05D004542 8.5e-16 87.4 123 40.7
Pp3c13_14220 Physcomitrium patens HOM05D003555 ORTHO05D004542 1.1e-15 87.0 124 41.9
Hma1.2p1_0403F.1_g145240 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 3.2e-15 85.5 113 47.8
Sc25g0000460 Simmondsia chinensis HOM05D003555 ORTHO05D004542 5.5e-15 84.7 63 68.3
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 1.2e-14 83.6 63 65.1
VMungo0464G1180 Vigna mungo HOM05D003555 ORTHO05D004542 4.6e-14 81.6 61 70.5
Lj9A484G61 Lonicera japonica HOM05D003555 ORTHO05D004542 5.1e-13 78.2 53 69.8
QL02p069938 Quercus lobata HOM05D003555 ORTHO05D004542 8.8e-13 77.4 81 56.8
Pp3c9_8980 Physcomitrium patens HOM05D003555 ORTHO05D004542 3.7e-11 72.0 123 38.2
VMungo0251G2278 Vigna mungo HOM05D003555 ORTHO05D001686 1.1e-10 70.5 46 71.7
ECA246G0182 Erigeron canadensis HOM05D003555 ORTHO05D004542 5.3e-10 68.2 47 66.0
Oeu058117.1 Olea europaea HOM05D003555 ORTHO05D004542 6.1e-06 54.7 40 65.0


User provided reference genes

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