Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 1.2e-56 223.0 116 100.0
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 2.2e-50 202.2 116 90.5
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 2.2e-50 202.2 116 90.5
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 2.8e-50 201.8 116 89.7
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 8.8e-44 180.3 116 80.2
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 6.3e-42 174.1 116 77.6
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.1e-41 173.3 98 89.8
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 3.4e-40 168.3 116 75.9
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 3.4e-40 168.3 116 75.9
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 6.5e-39 164.1 115 72.2
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 3.2e-38 161.8 115 72.2
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 1.2e-37 159.8 115 69.6
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 1.8e-36 156.0 114 68.4
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 2.3e-36 155.6 115 70.4
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 3.9e-36 154.8 114 68.4
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 2.4e-33 145.6 113 64.6
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 3.1e-33 145.2 115 67.0
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 4.1e-33 144.8 114 64.9
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 7.0e-33 144.1 116 69.8
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 7.0e-33 144.1 114 64.9
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 7.0e-33 144.1 117 60.7
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 1.5e-32 142.9 114 65.8
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.6e-32 142.1 114 64.0
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 5.9e-32 141.0 120 64.2
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 5.9e-32 141.0 116 68.1
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 7.7e-32 140.6 115 63.5
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 2.2e-31 139.0 116 65.5
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 1.9e-30 136.0 120 65.0
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 5.5e-30 134.4 114 62.3
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 2.1e-29 132.5 132 57.6
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 2.7e-29 132.1 121 58.7
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 3.6e-29 131.7 115 62.6
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 3.6e-29 131.7 115 62.6
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 3.6e-29 131.7 116 65.5
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 8.0e-29 130.6 118 64.4
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 2.3e-28 129.0 113 61.9
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 5.2e-28 127.9 115 60.9
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 8.8e-28 127.1 114 59.6
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 2.0e-27 125.9 116 56.9
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 2.0e-27 125.9 116 56.9
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.4e-27 124.8 118 60.2
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 4.4e-27 124.8 120 60.0
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 5.7e-27 124.4 130 56.9
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 9.7e-27 123.6 117 59.0
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 1.3e-26 123.2 118 59.3
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 1.3e-26 123.2 118 59.3
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 2.2e-26 122.5 123 59.3
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 2.2e-26 122.5 115 61.7
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 2.8e-26 122.1 118 56.8
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 3.7e-26 121.7 117 57.3
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 4.8e-26 121.3 115 59.1
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 4.8e-26 121.3 115 60.0
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.4e-25 119.8 115 57.4
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 1.4e-25 119.8 114 59.6
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 1.8e-25 119.4 115 55.7
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 2.4e-25 119.0 115 58.3
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 2.4e-25 119.0 120 55.8
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 3.1e-25 118.6 114 54.4
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 5.3e-25 117.9 114 57.9
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 1.2e-24 116.7 114 51.8
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 2.0e-24 115.9 115 54.8
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 2.6e-24 115.5 131 51.1
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 3.5e-24 115.2 100 66.0
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 3.5e-24 115.2 99 64.6
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 4.5e-24 114.8 116 56.0
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 4.5e-24 114.8 78 71.8
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 1.3e-23 113.2 116 55.2
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 3.8e-23 111.7 119 54.6
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 5.0e-23 111.3 114 55.3
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 6.5e-23 110.9 73 74.0
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 1.9e-22 109.4 119 55.5
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 4.2e-22 108.2 112 55.4
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 5.5e-22 107.8 118 55.1
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 7.2e-22 107.5 106 52.8
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 9.4e-22 107.1 100 56.0
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 1.2e-21 106.7 93 55.9
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 1.2e-21 106.7 116 54.3
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 1.6e-21 106.3 120 56.7
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.6e-21 106.3 119 54.6
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.6e-21 106.3 119 54.6
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 1.6e-21 106.3 115 53.9
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 3.6e-21 105.1 116 53.4
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 3.6e-21 105.1 115 50.4
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 1.2e-19 100.1 116 51.7
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 2.0e-19 99.4 114 48.2
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 7.5e-19 97.4 117 47.9
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 1.3e-18 96.7 124 46.0
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 1.7e-18 96.3 114 48.2
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 2.2e-18 95.9 114 47.4
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 2.2e-18 95.9 117 47.0
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 9.1e-17 90.5 116 49.1
Haze_25678 Corylus avellana HOM05D007094 ORTHO05D008264 3.8e-15 85.1 92 54.3
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 5.0e-15 84.7 96 53.1
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 1.1e-14 83.6 100 50.0
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 1.1e-14 83.6 110 47.3
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 1.1e-14 83.6 83 51.8
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 3.2e-14 82.0 103 49.5
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 4.2e-14 81.6 118 48.3
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 5.5e-14 81.3 91 50.5
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 4.7e-13 78.2 87 54.0
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 4.7e-13 78.2 79 49.4
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 6.1e-13 77.8 53 69.8
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 1.8e-12 76.3 202 34.7
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 5.2e-12 74.7 79 48.1
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 6.8e-12 74.3 116 44.0
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 2.6e-11 72.4 78 47.4
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 2.6e-11 72.4 50 68.0
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 9.8e-11 70.5 57 61.4
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 4.8e-10 68.2 79 43.0
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 4.1e-09 65.1 79 43.0
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 4.1e-09 65.1 79 43.0
Sed0018655 Sechium edule HOM05D007094 ORTHO05D008264 7.0e-09 64.3 93 49.5
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 3.5e-08 62.0 64 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 1.3e-07 60.1 126 34.9
Pp3c24_4990 Physcomitrium patens HOM05D007094 ORTHO05D008264 5.5e-06 54.7 117 34.2
C09p64630 Brassica napus HOM05D007094 ORTHO05D008264 7.2e-06 54.3 102 37.3


User provided reference genes

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