Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0048531 Rosa chinensis HOM05D000955 ORTHO05D003340 1.1e-36 156.4 96 100.0
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 2.8e-35 151.8 96 89.6
RcHm_v2.0_Chr6g0307621 Rosa chinensis HOM05D000955 ORTHO05D003340 4.6e-30 134.4 96 85.4
RcHm_v2.0_Chr6g0307791 Rosa chinensis HOM05D000955 ORTHO05D003340 4.6e-30 134.4 96 85.4
FAN20G1846 Fragaria x ananassa HOM05D000955 ORTHO05D003340 1.7e-29 132.5 96 85.4
FvH4_2g34550 Fragaria vesca HOM05D000955 ORTHO05D003340 5.6e-28 127.5 96 83.3
FAN15G0770 Fragaria x ananassa HOM05D000955 ORTHO05D003340 7.3e-28 127.1 96 82.3
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 3.6e-27 124.8 96 69.8
FAN27G2801 Fragaria x ananassa HOM05D000955 ORTHO05D003340 8.0e-27 123.6 96 80.2
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 1.8e-18 95.9 91 53.8
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.0e-18 94.7 94 52.1
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 8.9e-18 93.6 96 51.0
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 1.2e-17 93.2 96 52.1
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 1.5e-17 92.8 96 49.0
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.0e-17 92.4 94 46.8
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 2.6e-17 92.0 96 51.0
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 2.6e-17 92.0 96 50.0
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 5.8e-17 90.9 92 53.3
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 9.9e-17 90.1 93 48.4
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.3e-16 89.7 96 46.9
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.3e-16 89.7 96 50.0
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.3e-16 89.7 92 47.8
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 1.7e-16 89.4 97 46.4
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 1.7e-16 89.4 101 46.5
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.9e-16 88.6 96 47.9
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 3.7e-16 88.2 94 50.0
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 3.7e-16 88.2 93 48.4
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 6.4e-16 87.4 94 46.8
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 8.3e-16 87.0 93 62.4
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 1.4e-15 86.3 92 47.8
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.4e-15 86.3 94 45.7
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.9e-15 85.9 97 47.4
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 2.4e-15 85.5 88 48.9
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.4e-15 85.5 97 47.4
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.4e-15 85.5 97 47.4
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 3.2e-15 85.1 100 42.0
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 3.2e-15 85.1 94 47.9
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 4.1e-15 84.7 85 49.4
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 5.4e-15 84.3 80 53.8
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 5.4e-15 84.3 93 46.2
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 5.4e-15 84.3 88 48.9
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.2e-14 83.2 97 46.4
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.6e-14 82.8 99 41.4
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 2.1e-14 82.4 101 43.6
Cpa.g.sc49.7 Carica papaya HOM05D000955 ORTHO05D003340 2.1e-14 82.4 93 59.1
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.1e-14 82.4 97 46.4
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.7e-14 82.0 97 45.4
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 2.7e-14 82.0 100 45.0
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.5e-14 81.6 96 46.9
TPR.G10919 Trifolium pratense HOM05D000955 ORTHO05D003340 4.6e-14 81.3 93 45.2
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 4.6e-14 81.3 99 41.4
TPR.G17546 Trifolium pratense HOM05D000955 ORTHO05D003340 6.0e-14 80.9 93 45.2
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.0e-13 80.1 84 47.6
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 1.3e-13 79.7 93 45.2
Glyma.17G242800 Glycine max HOM05D000955 ORTHO05D003340 1.3e-13 79.7 93 44.1
Gorai.010G018600 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.3e-13 79.7 95 47.4
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.3e-13 79.7 96 43.8
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 1.3e-13 79.7 93 45.2
Psat6g013720 Pisum sativum HOM05D000955 ORTHO05D003340 1.3e-13 79.7 95 43.2
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 1.7e-13 79.3 94 48.9
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 1.7e-13 79.3 93 45.2
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.3e-13 79.0 94 44.7
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.3e-13 79.0 97 46.4
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 2.3e-13 79.0 89 47.2
Migut.C00587 Erythranthe guttata HOM05D000955 ORTHO05D003340 3.0e-13 78.6 95 44.2
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 3.0e-13 78.6 93 44.1
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 3.0e-13 78.6 93 44.1
Psat6g013600 Pisum sativum HOM05D000955 ORTHO05D003340 3.9e-13 78.2 93 41.9
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 3.9e-13 78.2 97 43.3
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 5.1e-13 77.8 93 43.0
Sabra14G0021900 Salix brachista HOM05D000955 ORTHO05D003340 5.1e-13 77.8 89 46.1
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 6.6e-13 77.4 82 47.6
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 6.6e-13 77.4 93 45.2
Aqoxy5G01246 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 8.6e-13 77.0 81 46.9
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 8.6e-13 77.0 95 46.3
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 8.6e-13 77.0 95 46.3
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 8.6e-13 77.0 95 46.3
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 8.6e-13 77.0 97 43.3
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 1.1e-12 76.6 101 39.6
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 1.5e-12 76.3 98 43.9
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.5e-12 76.3 97 46.4
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 1.9e-12 75.9 83 47.0
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 1.9e-12 75.9 93 44.1
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.9e-12 75.9 95 46.3
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 1.9e-12 75.9 93 43.0
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 2.5e-12 75.5 83 48.2
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 3.3e-12 75.1 93 43.0
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 4.3e-12 74.7 81 45.7
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 4.3e-12 74.7 94 43.6
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 5.6e-12 74.3 84 45.2
Gohir.D06G015800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.6e-12 74.3 95 45.3
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 9.6e-12 73.6 95 46.3
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 9.6e-12 73.6 91 41.8
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 1.2e-11 73.2 90 44.4
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 2.1e-11 72.4 78 48.7
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 2.1e-11 72.4 93 44.1
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 2.1e-11 72.4 91 45.1
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 2.1e-11 72.4 90 45.6
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 2.1e-11 72.4 97 44.3
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 3.6e-11 71.6 78 43.6
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 4.7e-11 71.2 92 41.3
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 4.7e-11 71.2 88 39.8
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 4.7e-11 71.2 81 42.0
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 8.1e-11 70.5 63 55.6
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 8.1e-11 70.5 91 44.0
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 8.1e-11 70.5 91 36.3
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 8.1e-11 70.5 90 44.4
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.1e-10 68.6 80 43.8
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 4.0e-10 68.2 80 40.0
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 5.2e-10 67.8 78 44.9
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 8.9e-10 67.0 71 49.3
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 8.9e-10 67.0 84 40.5
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.2e-09 66.6 88 38.6
HanXRQChr02g0039431 Helianthus annuus HOM05D000955 ORTHO05D003340 2.0e-09 65.9 88 40.9
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 2.0e-09 65.9 85 41.2
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.6e-09 65.5 93 47.3
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 2.6e-09 65.5 82 40.2
SalBow5G1664 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.4e-09 65.1 92 39.1
SalBow5G5547 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.4e-09 65.1 92 39.1
Duzib116G0076 Durio zibethinus HOM05D000955 ORTHO05D003340 7.6e-09 63.9 78 43.6
HPP92_004230 Vanilla planifolia HOM05D000955 ORTHO05D003340 7.6e-09 63.9 94 42.6
MSTRG.3423 Avicennia marina HOM05D000955 ORTHO05D003340 9.9e-09 63.5 88 36.4
Rhsim07G0229400 Rhododendron simsii HOM05D000955 ORTHO05D003340 9.9e-09 63.5 80 40.0
Gorai.010G019000 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.3e-08 63.2 49 65.3
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.3e-08 63.2 80 45.0
TPR.G28116 Trifolium pratense HOM05D000955 ORTHO05D003340 1.3e-08 63.2 84 44.0
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 1.7e-08 62.8 80 45.0
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.7e-08 62.8 80 37.5
Nn5g30251 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.2e-08 62.4 80 43.8
Os03g0395200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 2.2e-08 62.4 78 48.7
Gohir.D06G016150 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.8e-08 61.6 49 63.3
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 3.8e-08 61.6 78 43.6
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 4.9e-08 61.2 91 40.7
Os09g0458800 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 4.9e-08 61.2 78 37.2
Dinv39861 Davidia involucrata HOM05D000955 ORTHO05D003340 6.4e-08 60.8 80 37.5
HanXRQChr12g0378981 Helianthus annuus HOM05D000955 ORTHO05D003340 6.4e-08 60.8 90 35.6
Psat5g043640 Pisum sativum HOM05D000955 ORTHO05D003340 6.4e-08 60.8 88 40.9
Zm00001eb279150 Zea mays HOM05D000955 ORTHO05D003340 6.4e-08 60.8 81 40.7
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.1e-07 60.1 90 35.6
HanXRQChr15g0473701 Helianthus annuus HOM05D000955 ORTHO05D003340 1.1e-07 60.1 90 36.7
Medtr3g101610 Medicago truncatula HOM05D000955 ORTHO05D003340 1.1e-07 60.1 82 42.7
Eucgr.F00235 Eucalyptus grandis HOM05D000955 ORTHO05D003340 1.4e-07 59.7 67 46.3
Manes.12G102501 Manihot esculenta HOM05D000955 ORTHO05D003340 1.4e-07 59.7 80 40.0
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 1.4e-07 59.7 78 43.6
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 1.9e-07 59.3 88 38.6
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 1.9e-07 59.3 78 38.5
Sabra14G0021700 Salix brachista HOM05D000955 ORTHO05D003340 1.9e-07 59.3 88 36.4
Migut.H00439 Erythranthe guttata HOM05D000955 ORTHO05D003340 2.4e-07 58.9 83 39.8
Aqoxy5G01245 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.2e-07 58.5 96 35.4
COL.COLO4_11400 Corchorus olitorius HOM05D000955 ORTHO05D003340 3.2e-07 58.5 95 36.8
HanXRQChr12g0378991 Helianthus annuus HOM05D000955 ORTHO05D003340 3.2e-07 58.5 90 33.3
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.2e-07 58.5 80 35.0
Medtr3g101600 Medicago truncatula HOM05D000955 ORTHO05D003340 3.2e-07 58.5 84 41.7
Cpa.g.sc55.161 Carica papaya HOM05D000955 ORTHO05D003340 4.2e-07 58.2 78 39.7
Gohir.A12G070700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.2e-07 58.2 80 37.5
Gohir.D12G068600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.2e-07 58.2 80 37.5
Gorai.008G075000 Gossypium raimondii HOM05D000955 ORTHO05D003340 4.2e-07 58.2 80 37.5
Zm00001eb373190 Zea mays HOM05D000955 ORTHO05D003340 4.2e-07 58.2 82 40.2
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 7.1e-07 57.4 74 37.8
MSTRG.1342 Avicennia marina HOM05D000955 ORTHO05D003340 9.3e-07 57.0 91 35.2
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 9.3e-07 57.0 90 36.7
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 1.2e-06 56.6 72 38.9
Manes.18G036000 Manihot esculenta HOM05D000955 ORTHO05D003340 1.2e-06 56.6 81 37.0
ECA246G1907 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.6e-06 56.2 90 33.3
Lsat_1_v5_gn_3_90960 Lactuca sativa HOM05D000955 ORTHO05D003340 2.1e-06 55.8 88 34.1
Lsat_1_v5_gn_3_90980 Lactuca sativa HOM05D000955 ORTHO05D003340 2.1e-06 55.8 90 32.2
MBI02_g02966_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.1e-06 55.8 75 36.0
unitig_748.g8402 Utricularia gibba HOM05D000955 ORTHO05D003340 2.1e-06 55.8 74 37.8
Actinidia16499 Actinidia chinensis HOM05D000955 ORTHO05D003340 4.6e-06 54.7 80 37.5
DCAR_010900 Daucus carota HOM05D000955 ORTHO05D003340 4.6e-06 54.7 86 33.7
Manes.13G127500 Manihot esculenta HOM05D000955 ORTHO05D003340 4.6e-06 54.7 80 37.5
Rhsim07G0229300 Rhododendron simsii HOM05D000955 ORTHO05D003340 4.6e-06 54.7 54 44.4
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 4.6e-06 54.7 48 58.3
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 6.0e-06 54.3 71 54.9
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 7.8e-06 53.9 80 36.2
Potri.007G042700 Populus trichocarpa HOM05D000955 ORTHO05D003340 7.8e-06 53.9 80 36.2


User provided reference genes

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