Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047591 Rosa chinensis HOM05D002687 ORTHO05D002052 2.3e-102 375.6 189 100.0
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 5.8e-37 158.3 89 92.1
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 1.7e-36 156.8 89 91.0
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 3.8e-36 155.6 89 89.9
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 3.8e-36 155.6 89 89.9
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.2e-34 150.6 89 86.5
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 4.0e-22 109.0 89 65.2
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.5e-21 107.1 98 62.2
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 2.6e-21 106.3 89 65.2
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 7.6e-21 104.8 89 64.0
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 2.5e-16 89.7 86 58.1
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 5.6e-16 88.6 90 52.2
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.1e-15 86.7 89 49.4
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.1e-15 86.7 92 46.7
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 3.7e-15 85.9 87 50.6
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 4.8e-15 85.5 88 51.1
CAN.G1922.4 Capsicum annuum HOM05D002687 ORTHO05D002052 1.4e-14 84.0 81 46.9
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.1e-14 82.8 90 48.9
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 4.0e-14 82.4 97 42.3
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 4.0e-14 82.4 97 42.3
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 4.0e-14 82.4 88 42.0
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 4.0e-14 82.4 88 42.0
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 6.9e-14 81.6 86 47.7
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 6.9e-14 81.6 88 42.0
unitig_699.g19454 Utricularia gibba HOM05D002687 ORTHO05D002052 6.9e-14 81.6 88 46.6
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.0e-13 80.1 86 44.2
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 2.0e-13 80.1 97 46.4
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 2.0e-13 80.1 88 43.2
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.6e-13 78.2 90 47.8
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 7.6e-13 78.2 93 47.3
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 7.6e-13 78.2 85 48.2
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.3e-12 77.4 90 46.7
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.3e-12 77.4 86 47.7
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.3e-12 77.4 93 46.2
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 1.7e-12 77.0 83 44.6
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.7e-12 77.0 83 48.2
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-12 76.3 86 46.5
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.8e-12 75.9 97 42.3
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.8e-12 75.9 89 46.1
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 6.5e-12 75.1 85 43.5
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 6.5e-12 75.1 85 47.1
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 8.4e-12 74.7 93 45.2
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 8.4e-12 74.7 88 44.3
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 8.4e-12 74.7 91 46.2
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 8.4e-12 74.7 85 44.7
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 8.4e-12 74.7 87 40.2
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 1.1e-11 74.3 91 46.2
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.1e-11 74.3 88 38.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.1e-11 74.3 88 38.6
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.4e-11 73.9 86 45.3
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 1.9e-11 73.6 93 44.1
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 2.5e-11 73.2 91 45.1
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 3.2e-11 72.8 88 39.8
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 3.2e-11 72.8 93 45.2
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 4.2e-11 72.4 97 42.3
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 4.2e-11 72.4 92 35.9
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 4.2e-11 72.4 88 42.0
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 7.1e-11 71.6 91 45.1
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 7.1e-11 71.6 91 42.9
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 9.3e-11 71.2 97 40.2
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 9.3e-11 71.2 88 42.0
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 1.2e-10 70.9 83 41.0
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.2e-10 70.9 97 45.4
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.2e-10 70.9 83 41.0
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 1.6e-10 70.5 87 42.5
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 1.6e-10 70.5 98 42.9
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 1.6e-10 70.5 76 44.7
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 2.1e-10 70.1 93 44.1
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 2.1e-10 70.1 85 44.7
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 2.1e-10 70.1 85 41.2
Sabra09G0012500 Salix brachista HOM05D000430 ORTHO05D000305 2.1e-10 70.1 85 44.7
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.1e-10 70.1 82 41.5
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 2.1e-10 70.1 88 42.0
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 2.7e-10 69.7 88 38.6
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.7e-10 69.7 97 39.2
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.5e-10 69.3 86 44.2
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.5e-10 69.3 86 44.2
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 4.6e-10 68.9 88 38.6
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 4.6e-10 68.9 86 39.5
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 4.6e-10 68.9 80 46.2
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 4.6e-10 68.9 80 46.2
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.6e-10 68.9 86 38.4
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 6.1e-10 68.6 85 40.0
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.3e-09 67.4 88 39.8
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.3e-09 67.4 86 38.4
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 1.3e-09 67.4 86 37.2
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 1.3e-09 67.4 90 41.1
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.8e-09 67.0 88 39.8
Peaxi162Scf00010g00351 Petunia axillaris HOM05D002687 ORTHO05D002052 1.8e-09 67.0 84 35.7
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.8e-09 67.0 83 39.8
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 1.8e-09 67.0 83 39.8
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 1.8e-09 67.0 85 40.0
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.3e-09 66.6 88 39.8
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 2.3e-09 66.6 99 41.4
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.3e-09 66.6 91 37.4
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.3e-09 66.6 88 38.6
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 3.0e-09 66.2 88 36.4
SalBow7G2039 Salvia bowleyana HOM05D002687 ORTHO05D002052 3.0e-09 66.2 85 40.0
Duzib150G0865 Durio zibethinus HOM05D002687 ORTHO05D002052 3.9e-09 65.9 93 41.9
Medtr1g112350 Medicago truncatula HOM05D002810 ORTHO05D002052 3.9e-09 65.9 85 40.0
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.9e-09 65.9 91 36.3
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 3.9e-09 65.9 86 43.0
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 3.9e-09 65.9 94 42.6
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.9e-09 65.9 86 40.7
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 5.1e-09 65.5 91 36.3
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 5.1e-09 65.5 86 37.2
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 6.7e-09 65.1 85 42.4
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 1.5e-08 63.9 83 38.6
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.5e-08 63.9 83 41.0
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.9e-08 63.5 84 35.7
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 1.9e-08 63.5 99 35.4
Sopen11g027590 Solanum pennellii HOM05D002687 ORTHO05D002052 1.9e-08 63.5 93 32.3
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 2.5e-08 63.2 88 38.6
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 2.5e-08 63.2 72 37.5
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 5.7e-08 62.0 84 36.9
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 7.4e-08 61.6 84 36.9
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 9.7e-08 61.2 84 38.1
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 1.3e-07 60.8 103 35.0
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.3e-07 60.8 85 37.6
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 1.6e-07 60.5 81 39.5
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 1.6e-07 60.5 81 39.5
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 1.6e-07 60.5 81 39.5
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 2.2e-07 60.1 81 39.5
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 2.2e-07 60.1 84 39.3
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 2.8e-07 59.7 88 34.1
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 3.7e-07 59.3 81 39.5
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 3.7e-07 59.3 81 39.5
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 3.7e-07 59.3 103 35.0
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 3.7e-07 59.3 81 39.5
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 3.7e-07 59.3 103 35.0
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 3.7e-07 59.3 103 35.0
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 6.3e-07 58.5 103 34.0
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 8.2e-07 58.2 84 35.7
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.1e-06 57.8 71 40.8
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 1.4e-06 57.4 86 39.5
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 1.4e-06 57.4 86 39.5
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.4e-06 57.4 86 38.4
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 1.8e-06 57.0 103 34.0
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.8e-06 57.0 105 36.2
Dinv31751 Davidia involucrata HOM05D002687 ORTHO05D002052 3.1e-06 56.2 84 34.5
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 5.3e-06 55.5 88 36.4
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 6.9e-06 55.1 88 34.1
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 6.9e-06 55.1 87 39.1
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 9.0e-06 54.7 77 37.7
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 9.0e-06 54.7 84 34.5


User provided reference genes

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