Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047461 Rosa chinensis HOM05D006743 ORTHO05D008518 2.3e-23 111.3 53 100.0
RcHm_v2.0_Chr7g0231891 Rosa chinensis HOM05D006743 ORTHO05D008518 1.6e-21 105.1 53 98.1
RcHm_v2.0_Chr4g0439961 Rosa chinensis HOM05D006743 ORTHO05D008518 1.3e-10 68.9 35 100.0
FAN12G0030 Fragaria x ananassa HOM05D006743 ORTHO05D008518 1.7e-10 68.6 37 94.6
FvH4_4g31470 Fragaria vesca HOM05D006743 ORTHO05D008518 3.8e-10 67.4 35 97.1
FAN22G1517 Fragaria x ananassa HOM05D006743 ORTHO05D008518 3.8e-10 67.4 35 97.1
MD16G1074200 Malus domestica HOM05D006743 ORTHO05D008518 1.6e-08 62.0 35 85.7
Cpa.g.sc128.13 Carica papaya HOM05D006743 ORTHO05D008518 4.6e-08 60.5 35 82.9
QL03p064376 Quercus lobata HOM05D006743 ORTHO05D008518 4.6e-08 60.5 45 71.1
TWI12G0418 Tripterygium wilfordii HOM05D006743 ORTHO05D008518 7.9e-08 59.7 50 60.0
Lalb_Chr16g0385831 Lupinus albus HOM05D006743 ORTHO05D008518 1.0e-07 59.3 45 68.9
THA.LOC104805154 Tarenaya hassleriana HOM05D006743 ORTHO05D008518 1.0e-07 59.3 35 82.9
Manes.01G186600 Manihot esculenta HOM05D006743 ORTHO05D008518 1.3e-07 58.9 35 80.0
ECA233G3761 Erigeron canadensis HOM05D006743 ORTHO05D008518 2.3e-07 58.2 35 80.0
Lj3C1038T21 Lonicera japonica HOM05D006743 ORTHO05D008518 2.3e-07 58.2 35 77.1
Medtr8g055880 Medicago truncatula HOM05D006743 ORTHO05D008518 2.3e-07 58.2 35 80.0
TPR.G31812 Trifolium pratense HOM05D006743 ORTHO05D008518 2.3e-07 58.2 35 80.0
arahy.Tifrunner.gnm1.ann1.0ELP1Z Arachis hypogaea HOM05D006743 ORTHO05D008518 3.0e-07 57.8 45 66.7
arahy.Tifrunner.gnm1.ann1.MT78EL Arachis hypogaea HOM05D006743 ORTHO05D008518 3.0e-07 57.8 45 66.7
CiPaw.06G083800 Carya illinoinensis HOM05D006743 ORTHO05D008518 3.0e-07 57.8 35 77.1
Haze_12021 Corylus avellana HOM05D006743 ORTHO05D008518 3.0e-07 57.8 35 77.1
Psat4g134120 Pisum sativum HOM05D006743 ORTHO05D008518 3.0e-07 57.8 35 80.0
Rhsim12G0063200 Rhododendron simsii HOM05D006743 ORTHO05D008518 3.0e-07 57.8 35 80.0
Duzib268G1478 Durio zibethinus HOM05D006743 ORTHO05D008518 3.9e-07 57.4 35 80.0
Phvul.003G049600 Phaseolus vulgaris HOM05D006743 ORTHO05D008518 3.9e-07 57.4 45 66.7
Atru.chr11.1802 Acer truncatum HOM05D006743 ORTHO05D008518 5.1e-07 57.0 35 77.1
Hma1.2p1_0598F.1_g186620 Hydrangea macrophylla HOM05D006743 ORTHO05D008518 5.1e-07 57.0 35 77.1
Hma1.2p1_0598F.1_g186630 Hydrangea macrophylla HOM05D006743 ORTHO05D008518 5.1e-07 57.0 35 77.1
Lj4g0006351 Lotus japonicus HOM05D006743 ORTHO05D008518 5.1e-07 57.0 35 77.1
PGR119G0901 Punica granatum HOM05D006743 ORTHO05D008518 5.1e-07 57.0 35 77.1
vmacro01252 Vaccinium macrocarpon HOM05D006743 ORTHO05D008518 5.1e-07 57.0 35 80.0
CAN.G58.36 Capsicum annuum HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 77.1
Ca_24218_v3 Cicer arietinum L. HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 77.1
ClCG09G009490 Citrullus lanatus HOM05D006743 ORTHO05D008518 6.7e-07 56.6 45 66.7
COL.COLO4_22995 Corchorus olitorius HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 80.0
MELO3C024128.2 Cucumis melo HOM05D006743 ORTHO05D008518 6.7e-07 56.6 45 66.7
CsaV3_7G025360 Cucumis sativus L. HOM05D006743 ORTHO05D008518 6.7e-07 56.6 45 66.7
Dinv16636 Davidia involucrata HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 74.3
PSO478G0657 Papaver somniferum HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 77.1
Solyc05g007440.3 Solanum lycopersicum HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 77.1
Sopen05g003320 Solanum pennellii HOM05D006743 ORTHO05D008518 6.7e-07 56.6 35 77.1
Glyma.08G300451 Glycine max HOM05D006743 ORTHO05D008518 8.7e-07 56.2 35 77.1
Gohir.A12G165400 Gossypium hirsutum HOM05D006743 ORTHO05D008518 8.7e-07 56.2 35 77.1
Gohir.D12G168500 Gossypium hirsutum HOM05D006743 ORTHO05D008518 8.7e-07 56.2 35 77.1
VMungo0251G3125 Vigna mungo HOM05D006743 ORTHO05D008518 8.7e-07 56.2 45 64.4
CSS0008818 Camellia sinensis var. sinensis HOM05D006743 ORTHO05D008518 1.1e-06 55.8 35 74.3
Potri.013G124050 Populus trichocarpa HOM05D006743 ORTHO05D008518 1.1e-06 55.8 35 77.1
TAR622G0326 Trochodendron aralioides HOM05D006743 ORTHO05D008518 1.1e-06 55.8 35 77.1
GSVIVG01020003001 Vitis vinifera HOM05D006743 ORTHO05D008518 1.1e-06 55.8 35 74.3
Cc11_g13110 Coffea canephora HOM05D006743 ORTHO05D008518 1.5e-06 55.5 35 74.3
PGSC0003DMG400003385 Solanum tuberosum HOM05D006743 ORTHO05D008518 1.5e-06 55.5 35 74.3
Nn3g17215 Nelumbo nucifera HOM05D006743 ORTHO05D008518 1.9e-06 55.1 35 74.3
HPP92_011352 Vanilla planifolia HOM05D006743 ORTHO05D008518 1.9e-06 55.1 35 74.3
HanXRQChr12g0362551 Helianthus annuus HOM05D006743 ORTHO05D008518 2.5e-06 54.7 35 77.1
Aa31LG1G750 Aethionema arabicum HOM05D006743 ORTHO05D008518 3.3e-06 54.3 35 74.3
CARHR014720 Cardamine hirsuta HOM05D006743 ORTHO05D008518 3.3e-06 54.3 35 77.1
MBI02_g23683_MAGBIO Magnolia biondii HOM05D006743 ORTHO05D008518 3.3e-06 54.3 35 77.1
Nitab4.5_0000703g0080 Nicotiana tabacum HOM05D006743 ORTHO05D008518 3.3e-06 54.3 35 74.3
Nitab4.5_0012364g0010 Nicotiana tabacum HOM05D006743 ORTHO05D008518 3.3e-06 54.3 35 74.3
Sabra13G0103000 Salix brachista HOM05D006743 ORTHO05D008518 3.3e-06 54.3 35 74.3
Lsat_1_v5_gn_8_52820 Lactuca sativa HOM05D006743 ORTHO05D008518 4.3e-06 53.9 35 77.1
Peaxi162Scf00541g00528 Petunia axillaris HOM05D006743 ORTHO05D008518 4.3e-06 53.9 35 74.3
Potri.019G092000 Populus trichocarpa HOM05D006743 ORTHO05D008518 4.3e-06 53.9 35 71.4
Sabra19G0105400 Salix brachista HOM05D006743 ORTHO05D008518 4.3e-06 53.9 52 53.8
Sed0013774 Sechium edule HOM05D006743 ORTHO05D008518 4.3e-06 53.9 45 60.0
CANSAT80G2808 Cannabis sativa HOM05D006743 ORTHO05D008518 7.4e-06 53.1 35 74.3
DCAR_007148 Daucus carota HOM05D006743 ORTHO05D008518 7.4e-06 53.1 35 74.3
Sp1g12650 Schrenkiella parvula HOM05D006743 ORTHO05D008518 7.4e-06 53.1 35 74.3
Sc14g0008270 Simmondsia chinensis HOM05D006743 ORTHO05D008518 7.4e-06 53.1 36 69.4
SGA_v2.0_scaffold389G50576 Striga asiatica HOM05D006743 ORTHO05D008518 7.4e-06 53.1 37 67.6
Hund05886 Selenicereus undatus HOM05D006743 ORTHO05D008518 9.6e-06 52.8 35 74.3
unitig_22.g5546 Utricularia gibba HOM05D006743 ORTHO05D008518 9.6e-06 52.8 50 54.0


User provided reference genes

Program Settings