Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 3.9e-100 368.2 202 100.0
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 2.7e-88 328.9 202 89.6
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.7e-88 328.9 202 89.6
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.5e-86 322.4 202 89.1
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.7e-85 318.9 202 88.1
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 8.0e-85 317.4 202 88.1
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 1.9e-70 269.6 201 75.1
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 4.1e-65 251.9 204 77.0
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 6.0e-64 248.1 200 74.5
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 1.9e-62 243.0 205 72.7
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 4.3e-62 241.9 203 69.5
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 1.2e-61 240.4 201 75.1
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 3.6e-61 238.8 202 69.3
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 4.7e-61 238.4 204 69.1
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 4.7e-61 238.4 201 73.6
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 4.7e-61 238.4 203 68.5
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 6.2e-61 238.0 203 70.4
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 8.0e-61 237.7 202 70.8
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 1.4e-60 236.9 191 72.8
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 1.4e-60 236.9 202 70.8
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 1.4e-60 236.9 203 69.5
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 2.3e-60 236.1 203 71.9
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 5.2e-60 235.0 207 68.1
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 5.2e-60 235.0 207 68.1
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 6.8e-60 234.6 203 71.4
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 8.9e-60 234.2 203 67.0
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 8.9e-60 234.2 202 69.8
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 4.4e-59 231.9 204 68.1
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 9.8e-59 230.7 204 67.6
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 2.2e-58 229.6 200 68.0
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 3.7e-58 228.8 198 68.7
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 4.9e-58 228.4 202 68.3
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 6.4e-58 228.0 159 80.5
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 8.3e-58 227.6 193 69.9
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.1e-57 227.3 202 66.3
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.1e-57 227.3 202 66.3
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 1.4e-57 226.9 206 67.5
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 2.4e-57 226.1 203 68.5
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 3.2e-57 225.7 167 76.0
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 3.2e-57 225.7 202 66.3
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 4.1e-57 225.3 193 67.4
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 5.4e-57 224.9 165 79.4
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 5.4e-57 224.9 192 68.2
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 7.1e-57 224.6 202 65.8
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 7.1e-57 224.6 209 66.5
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 9.2e-57 224.2 205 67.3
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 1.2e-56 223.8 206 65.0
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 1.6e-56 223.4 203 69.5
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 2.1e-56 223.0 202 66.8
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 2.7e-56 222.6 190 69.5
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 4.6e-56 221.9 208 66.8
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 6.0e-56 221.5 208 66.3
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 6.0e-56 221.5 197 67.0
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 6.0e-56 221.5 199 65.8
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 6.0e-56 221.5 204 66.2
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 6.0e-56 221.5 200 71.0
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 5.1e-55 218.4 203 65.0
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 6.6e-55 218.0 177 70.1
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 6.6e-55 218.0 160 78.8
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 8.6e-55 217.6 192 64.6
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.1e-54 217.2 204 66.2
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 1.1e-54 217.2 160 78.1
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.5e-54 216.9 151 79.5
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.5e-54 216.1 169 72.8
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.5e-54 216.1 158 76.6
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 2.5e-54 216.1 202 66.3
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 4.3e-54 215.3 216 63.4
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 9.5e-54 214.2 201 64.2
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-53 213.4 204 63.2
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-53 213.4 204 63.2
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 2.1e-53 213.0 158 74.7
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 2.8e-53 212.6 192 63.5
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 2.8e-53 212.6 202 65.3
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 3.6e-53 212.2 162 74.7
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 4.7e-53 211.8 179 68.2
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 4.7e-53 211.8 207 65.7
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 4.7e-53 211.8 162 74.7
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 6.2e-53 211.5 202 65.3
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 8.1e-53 211.1 201 64.2
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 8.1e-53 211.1 162 74.7
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 1.4e-52 210.3 158 73.4
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 2.3e-52 209.5 203 64.5
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 2.3e-52 209.5 200 64.0
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 3.1e-52 209.1 167 74.3
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 5.2e-52 208.4 204 64.2
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 5.2e-52 208.4 171 70.8
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 8.9e-52 207.6 175 69.1
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 8.9e-52 207.6 158 73.4
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 1.2e-51 207.2 174 70.1
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 1.2e-51 207.2 164 73.2
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 2.0e-51 206.5 203 63.5
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 2.0e-51 206.5 203 63.5
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 2.0e-51 206.5 201 65.2
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 3.4e-51 205.7 157 74.5
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 4.4e-51 205.3 195 64.1
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 2.2e-50 203.0 164 73.2
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 9.2e-49 197.6 132 78.8
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 1.2e-48 197.2 170 65.9
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 1.6e-48 196.8 183 66.1
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 2.7e-48 196.1 201 62.2
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.2e-45 187.2 128 78.1
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 1.2e-45 187.2 153 70.6
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 2.8e-45 186.0 126 74.6
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 3.4e-43 179.1 205 57.1
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 7.6e-43 177.9 183 56.8
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 3.8e-42 175.6 183 57.4
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 8.4e-42 174.5 117 82.9
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 8.4e-42 174.5 156 62.2
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 3.2e-41 172.6 119 76.5
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 1.2e-40 170.6 120 79.2
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 2.7e-40 169.5 124 73.4
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 6.0e-40 168.3 108 84.3
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 1.9e-38 163.3 117 76.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 1.1e-36 157.5 129 62.8
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 5.3e-36 155.2 179 50.8
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 2.3e-31 139.8 134 60.4
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 3.3e-30 136.0 128 57.8
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-29 133.7 162 57.4
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 6.2e-29 131.7 86 84.9
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.1e-28 131.0 86 83.7
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.0e-28 129.0 86 82.6
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 2.0e-27 126.7 162 52.5
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.7e-26 123.6 86 81.4
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.3e-23 114.0 78 82.1
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 3.9e-23 112.5 143 54.5
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 1.6e-21 107.1 92 66.3
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 5.3e-20 102.1 126 52.4
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 6.7e-15 85.1 59 72.9
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 3.0e-07 59.7 105 38.1


User provided reference genes

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