Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 8.4e-91 337.0 174 100.0
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.4e-85 318.9 174 93.7
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.4e-85 318.9 174 93.7
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 9.0e-85 317.0 174 93.7
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.5e-84 316.2 174 92.5
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 7.6e-84 313.9 174 93.1
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 3.2e-82 308.5 174 90.2
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 4.2e-82 308.1 174 89.1
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 4.2e-82 308.1 174 89.1
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 1.2e-76 290.0 174 82.8
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.2e-76 290.0 174 82.8
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.5e-76 289.7 174 82.8
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.5e-76 289.7 174 81.0
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 3.4e-76 288.5 174 82.2
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 5.8e-76 287.7 174 82.2
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 7.6e-76 287.3 174 82.2
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.0e-75 287.0 174 81.6
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 81.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 79.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 79.3
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 1.2e-73 280.0 174 79.9
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 79.9
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 78.7
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 79.9
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 77.6
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 77.6
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 77.6
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 5.1e-72 274.6 174 78.7
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 5.1e-72 274.6 174 77.0
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 78.7
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 2.5e-71 272.3 194 72.2
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 78.2
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 76.4
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.9
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 77.0
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 77.0
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 4.8e-70 268.1 175 77.7
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 75.9
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.3
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 74.1
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 74.1
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 74.1
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 74.1
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 74.1
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.1
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.7
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 75.9
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 73.6
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 74.7
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 75.9
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 2.0e-68 262.7 175 74.3
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 75.9
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 74.1
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 4.5e-68 261.5 172 76.2
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 73.6
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.6
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 74.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 72.4
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.9e-67 258.8 198 68.7
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 73.6
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 73.0
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 1.4e-66 256.5 174 71.3
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 4.2e-66 255.0 171 75.4
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 71.3
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.1e-65 252.7 171 70.8
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.7e-65 252.3 158 79.1
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 73.0
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 70.1
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 71.3
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 71.8
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.0e-64 248.8 174 70.1
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.7e-64 247.3 174 71.3
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 71.3
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 70.7
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 70.7
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 70.1
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 70.1
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 7.4e-63 244.2 166 71.1
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 70.7
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.2e-62 242.7 174 69.0
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 2.8e-62 242.3 166 70.5
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 69.5
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.4e-61 239.2 173 70.5
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 4.1e-61 238.4 143 78.3
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 67.8
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 2.9e-59 232.3 146 80.8
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 8.5e-59 230.7 172 67.4
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 5.5e-58 228.0 174 67.8
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.2e-58 227.6 156 71.2
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 63.8
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 67.2
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 7.9e-57 224.2 151 69.5
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 2.3e-56 222.6 174 65.5
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 1.5e-55 219.9 175 65.1
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.3e-55 218.8 174 65.5
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 4.4e-55 218.4 174 64.9
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 7.4e-55 217.6 174 64.4
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.7e-54 216.5 174 62.6
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.8e-54 215.7 174 64.4
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 4.8e-54 214.9 174 63.8
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 4.8e-54 214.9 174 63.8
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 6.3e-54 214.5 122 82.8
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 6.3e-54 214.5 174 63.2
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 1.4e-53 213.4 174 62.1
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 1.8e-53 213.0 147 72.1
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 5.3e-53 211.5 174 62.6
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.2e-52 210.3 174 62.6
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 8.5e-51 204.1 174 62.1
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 1.4e-50 203.4 174 61.5
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.9e-50 203.0 171 62.0
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.5e-50 202.6 171 62.0
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 3.2e-50 202.2 196 56.1
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.0e-48 197.2 122 72.1
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 6.7e-48 194.5 176 58.0
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.3e-46 188.0 122 72.1
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.8e-45 186.4 239 46.0
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 1.0e-43 180.6 171 54.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.0e-43 180.6 175 54.3
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 7.2e-42 174.5 182 52.2
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 4.4e-39 165.2 95 81.1
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.3e-38 163.7 177 47.5
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 8.2e-38 161.0 174 51.1
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 8.2e-38 161.0 176 51.1
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.7e-36 156.0 174 44.8
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.7e-35 153.3 94 72.3
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.5e-34 149.4 94 69.1
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 5.5e-34 148.3 93 72.0
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 1.5e-26 123.6 127 55.9
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 9.5e-26 120.9 85 65.9
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.8e-24 114.8 96 52.1
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 3.1e-21 105.9 67 71.6
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 4.5e-20 102.1 121 49.6
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 3.8e-19 99.0 168 34.5
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 8.6e-19 97.8 55 74.5
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 3.3e-18 95.9 85 60.0
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.6e-18 95.1 53 77.4
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.0e-16 89.0 48 79.2
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 4.9e-14 82.0 176 28.4
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.6e-12 75.5 38 81.6
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.9e-10 70.1 93 43.0
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 9.5e-10 67.8 173 28.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.7e-06 55.8 171 29.8


User provided reference genes

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