Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045731 Rosa chinensis HOM05D004536 ORTHO05D005628 4.6e-35 150.6 72 100.0
RcHm_v2.0_Chr5g0046521 Rosa chinensis HOM05D004536 ORTHO05D005628 4.6e-35 150.6 72 100.0
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 4.6e-35 150.6 72 100.0
RcHm_v2.0_Chr5g0045951 Rosa chinensis HOM05D004536 ORTHO05D005628 3.0e-34 147.9 72 98.6
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 2.8e-24 114.8 72 76.4
RcHm_v2.0_Chr5g0045701 Rosa chinensis HOM05D067305 ORTHO05D005628 2.8e-24 114.8 57 96.5
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 6.2e-24 113.6 72 79.2
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 6.2e-24 113.6 72 76.4
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 8.2e-24 113.2 72 79.2
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.1e-23 112.8 72 81.9
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.1e-23 112.8 72 81.9
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 1.8e-23 112.1 69 76.8
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 1.8e-23 112.1 72 75.0
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 3.1e-23 111.3 69 76.8
MD11G1302700 Malus domestica HOM05D004536 ORTHO05D005628 5.3e-23 110.5 68 77.9
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 2.6e-22 108.2 68 73.5
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 2.6e-22 108.2 68 73.5
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 5.8e-22 107.1 69 72.5
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.0e-21 106.3 69 71.0
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 1.0e-21 106.3 69 73.9
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 1.7e-21 105.5 67 71.6
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 2.2e-21 105.1 69 75.4
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 3.8e-21 104.4 62 80.6
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 5.0e-21 104.0 69 69.6
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 1.1e-20 102.8 64 73.4
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 1.1e-20 102.8 69 71.0
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 1.1e-20 102.8 68 70.6
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 1.4e-20 102.4 68 66.2
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 1.4e-20 102.4 69 69.6
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 1.4e-20 102.4 69 71.0
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 1.4e-20 102.4 69 69.6
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 1.9e-20 102.1 67 71.6
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 1.9e-20 102.1 69 68.1
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 1.9e-20 102.1 69 68.1
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 3.2e-20 101.3 69 68.1
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 3.2e-20 101.3 67 73.1
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 3.2e-20 101.3 68 69.1
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 3.2e-20 101.3 69 68.1
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 4.2e-20 100.9 69 69.6
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 4.2e-20 100.9 69 66.7
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 4.2e-20 100.9 67 73.1
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 5.5e-20 100.5 69 73.9
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 5.5e-20 100.5 64 70.3
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 7.1e-20 100.1 67 71.6
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 7.1e-20 100.1 69 69.6
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 7.1e-20 100.1 69 68.1
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 9.3e-20 99.8 69 71.0
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.2e-19 99.4 69 68.1
Cpa.g.sc9.197 Carica papaya HOM05D004536 ORTHO05D005628 1.2e-19 99.4 65 72.3
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 1.6e-19 99.0 68 69.1
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 1.6e-19 99.0 67 65.7
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 2.1e-19 98.6 72 70.8
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 2.1e-19 98.6 67 62.7
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 2.7e-19 98.2 67 68.7
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 2.7e-19 98.2 72 70.8
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 2.7e-19 98.2 68 66.2
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 3.5e-19 97.8 64 65.6
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 3.5e-19 97.8 65 67.7
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 4.6e-19 97.4 68 66.2
COL.COLO4_23401 Corchorus olitorius HOM05D004536 ORTHO05D005628 6.1e-19 97.1 72 70.8
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 7.9e-19 96.7 64 70.3
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.0e-18 96.3 71 66.2
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 3.0e-18 94.7 68 64.7
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 3.0e-18 94.7 67 65.7
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 3.9e-18 94.4 56 80.4
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 5.1e-18 94.0 65 66.2
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 6.7e-18 93.6 70 62.9
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 6.7e-18 93.6 72 68.1
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 6.7e-18 93.6 69 62.3
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 1.1e-17 92.8 69 66.7
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 1.1e-17 92.8 69 66.7
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 1.1e-17 92.8 72 66.7
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 1.5e-17 92.4 65 67.7
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 1.5e-17 92.4 67 65.7
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 1.9e-17 92.0 65 66.2
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 1.9e-17 92.0 62 71.0
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 2.5e-17 91.7 65 66.2
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 3.3e-17 91.3 65 66.2
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 3.3e-17 91.3 65 66.2
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 3.3e-17 91.3 68 66.2
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 3.3e-17 91.3 65 66.2
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 4.3e-17 90.9 65 66.2
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 7.4e-17 90.1 65 67.7
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 7.4e-17 90.1 65 67.7
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 7.4e-17 90.1 65 66.2
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 1.3e-16 89.4 65 63.1
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 1.3e-16 89.4 65 64.6
Migut.K00643 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.6e-16 89.0 68 60.3
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 2.2e-16 88.6 68 61.8
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 6.3e-16 87.0 65 64.6
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 6.3e-16 87.0 65 63.1
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 1.4e-15 85.9 65 63.1
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 1.4e-15 85.9 57 68.4
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 1.8e-15 85.5 62 62.9
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 2.4e-15 85.1 65 61.5
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 2.4e-15 85.1 67 62.7
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 6.9e-15 83.6 66 60.6
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 6.9e-15 83.6 68 57.4
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 1.2e-14 82.8 110 45.5
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 7.7e-14 80.1 66 60.6
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 1.3e-13 79.3 67 52.2
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 3.8e-13 77.8 63 58.7
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 5.0e-13 77.4 66 56.1
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 5.0e-13 77.4 67 50.7
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 6.5e-13 77.0 91 47.3
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 1.4e-12 75.9 64 57.8
CBR_g44348 Chara braunii HOM05D004536 ORTHO05D005628 1.8e-10 68.9 62 50.0
Mapoly0002s0169 Marchantia polymorpha HOM05D004536 ORTHO05D005628 3.0e-10 68.2 65 50.8
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 5.1e-10 67.4 67 47.8
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 6.7e-10 67.0 63 54.0
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 8.8e-10 66.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_362.1715 Anthoceros agrestis HOM05D004536 ORTHO05D005628 1.5e-09 65.9 64 46.9
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 2.0e-09 65.5 40 65.0
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 2.5e-09 65.1 44 72.7
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 1.3e-08 62.8 40 75.0
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 1.3e-08 62.8 40 70.0
SMO116G0459 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 4.8e-08 60.8 63 46.0
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 1.1e-07 59.7 64 45.3
Migut.M00484 Erythranthe guttata HOM05D004536 ORTHO05D005628 6.9e-07 57.0 40 65.0


User provided reference genes

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