Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 3.3e-57 224.9 122 100.0
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.2e-48 194.1 122 91.0
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 3.5e-43 178.3 127 82.7
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.5e-43 178.3 127 82.7
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.3e-42 176.4 127 81.9
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 7.3e-33 144.1 125 68.8
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 70.2
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.8e-32 142.1 127 66.9
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.4e-31 139.8 127 65.4
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.8e-31 139.4 127 67.7
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.8e-31 139.4 123 66.7
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 3.1e-31 138.7 127 67.7
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 6.8e-31 137.5 125 65.6
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 8.9e-31 137.1 124 69.4
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.9e-31 137.1 128 63.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.5e-30 136.3 128 62.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 2.6e-30 135.6 124 66.1
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 7.6e-30 134.0 127 62.2
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 6.4e-29 131.0 129 63.6
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 8.4e-29 130.6 122 62.3
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.4e-28 129.8 124 62.9
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.9e-28 129.4 81 84.0
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 2.4e-28 129.0 121 65.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.2e-28 128.6 128 60.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 4.2e-28 128.3 124 62.9
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 5.4e-28 127.9 126 60.3
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 7.1e-28 127.5 121 60.3
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 9.3e-28 127.1 126 62.7
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 9.3e-28 127.1 128 63.3
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.2e-27 126.7 124 65.3
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.7e-27 125.6 125 61.6
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 2.7e-27 125.6 127 62.2
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 2.7e-27 125.6 127 61.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.5e-27 125.2 129 62.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 6.0e-27 124.4 136 60.3
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 6.0e-27 124.4 128 60.9
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.0e-26 123.6 128 62.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.0e-26 123.6 128 62.5
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.0e-26 123.6 129 60.5
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.3e-26 123.2 123 61.8
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 2.3e-26 122.5 128 61.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 3.0e-26 122.1 125 61.6
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 3.0e-26 122.1 128 62.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.0e-26 122.1 119 60.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 5.1e-26 121.3 129 61.2
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 6.6e-26 120.9 127 58.3
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 6.6e-26 120.9 128 60.9
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.1e-25 120.2 120 63.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 1.1e-25 120.2 127 59.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.5e-25 119.8 126 59.5
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.9e-25 119.4 121 59.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 1.9e-25 119.4 123 57.7
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 3.3e-25 118.6 128 60.9
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.3e-25 118.2 121 58.7
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 4.3e-25 118.2 126 60.3
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 9.6e-25 117.1 125 60.8
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.3e-24 116.7 121 61.2
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.1e-24 115.9 125 58.4
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.1e-24 115.9 125 57.6
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 2.8e-24 115.5 125 60.8
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.8e-24 114.8 126 58.7
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 4.8e-24 114.8 123 56.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 4.8e-24 114.8 123 56.1
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 6.2e-24 114.4 120 58.3
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 8.1e-24 114.0 127 59.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.1e-23 113.6 126 58.7
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.4e-23 113.2 124 57.3
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.4e-23 113.2 128 57.0
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.8e-23 112.8 128 56.2
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 2.4e-23 112.5 124 58.1
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.4e-23 112.5 124 58.1
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.4e-23 112.5 125 57.6
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.4e-23 112.5 119 55.5
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 4.0e-23 111.7 128 57.8
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.5e-22 109.8 117 59.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 2.0e-22 109.4 125 56.8
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.4e-22 108.6 118 59.3
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 4.4e-22 108.2 110 60.9
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 4.4e-22 108.2 119 54.6
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 5.8e-22 107.8 133 54.1
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.9e-21 104.8 125 56.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 8.4e-21 104.0 125 55.2
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 8.4e-21 104.0 123 53.7
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 5.4e-20 101.3 118 55.1
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 2.7e-19 99.0 153 48.4
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 3.0e-18 95.5 123 52.0
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.9e-18 95.1 133 51.9
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 6.6e-18 94.4 116 52.6
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.5e-17 93.2 77 70.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.5e-17 93.2 123 51.2
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.9e-17 92.8 119 50.4
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.5e-17 92.4 121 52.1
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 4.3e-17 91.7 130 47.7
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 5.6e-17 91.3 127 51.2
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 7.3e-17 90.9 128 52.3
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 7.3e-17 90.9 123 52.0
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.6e-17 90.5 80 65.0
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.3e-16 90.1 123 50.4
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.3e-16 90.1 127 46.5
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-16 89.7 127 45.7
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.1e-16 89.4 126 50.0
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 2.1e-16 89.4 129 51.2
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.8e-16 89.0 124 50.0
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.6e-16 88.6 123 49.6
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.6e-16 88.6 80 63.8
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 3.6e-16 88.6 131 50.4
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 6.2e-16 87.8 123 48.8
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 6.2e-16 87.8 128 50.8
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 6.2e-16 87.8 128 50.8
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 6.2e-16 87.8 128 50.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 8.1e-16 87.4 118 51.7
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.4e-15 86.7 80 63.8
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.4e-15 86.7 127 51.2
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.8e-15 86.3 83 60.2
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-15 85.1 122 49.2
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 4.0e-15 85.1 122 49.2
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 5.3e-15 84.7 127 49.6
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 5.3e-15 84.7 127 49.6
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 5.3e-15 84.7 127 49.6
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 5.3e-15 84.7 120 49.2
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 6.9e-15 84.3 118 50.8
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.5e-14 83.2 121 46.3
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.5e-14 83.2 86 67.4
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.0e-14 82.8 126 47.6
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 2.6e-14 82.4 126 47.6
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 3.8e-13 78.6 77 59.7
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 3.2e-12 75.5 100 47.0
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 4.2e-12 75.1 122 43.4
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.4e-12 74.7 71 62.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 5.4e-12 74.7 128 46.1
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 2.1e-11 72.8 110 45.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.0e-11 71.2 77 59.7
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.0e-11 71.2 64 59.4
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.0e-11 71.2 64 59.4
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 6.0e-11 71.2 92 48.9
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.3e-10 69.3 120 41.7
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 8.7e-10 67.4 113 46.0
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.5e-09 66.6 118 39.8
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.9e-09 66.2 195 33.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 5.6e-09 64.7 78 51.3
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.3e-08 63.5 65 52.3
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.6e-08 63.2 123 39.8
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.2e-06 57.0 65 61.5


User provided reference genes

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