Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0046261 Rosa chinensis HOM05D000065 ORTHO05D344010 1.6e-48 195.7 95 100.0
RcHm_v2.0_Chr5g0046511 Rosa chinensis HOM05D000065 ORTHO05D341487 1.2e-30 136.3 66 98.5
RcHm_v2.0_Chr5g0048851 Rosa chinensis HOM05D000065 ORTHO05D345870 1.3e-21 106.3 53 98.1
RcHm_v2.0_Chr4g0425461 Rosa chinensis HOM05D000065 ORTHO05D001606 6.3e-16 87.4 62 67.7
FAN07G2078 Fragaria x ananassa HOM05D000065 ORTHO05D001606 1.1e-15 86.7 62 67.7
FvH4_4g19872 Fragaria vesca HOM05D000065 ORTHO05D001606 1.4e-15 86.3 62 67.7
FAN12G3420 Fragaria x ananassa HOM05D000065 ORTHO05D001606 1.4e-15 86.3 62 67.7
FAN07G2746 Fragaria x ananassa HOM05D000065 ORTHO05D001606 1.0e-13 80.1 62 59.7
FvH4_4g19871 Fragaria vesca HOM05D000065 ORTHO05D001606 6.5e-13 77.4 62 59.7
RcHm_v2.0_Chr4g0425641 Rosa chinensis HOM05D000065 ORTHO05D001606 9.5e-12 73.6 62 59.7
RcHm_v2.0_Chr4g0425491 Rosa chinensis HOM05D000065 ORTHO05D001606 6.1e-11 70.9 62 51.6
FvH4_4g19851 Fragaria vesca HOM05D000065 ORTHO05D001606 5.2e-10 67.8 65 47.7
Solyc01g059840.3 Solanum lycopersicum HOM05D000065 ORTHO05D001606 2.6e-09 65.5 62 51.6
EL10Ac3g05519 Beta vulgaris HOM05D000065 ORTHO05D001606 3.4e-09 65.1 62 51.6
Sopen01g025120 Solanum pennellii HOM05D000065 ORTHO05D001606 3.4e-09 65.1 62 51.6
PGSC0003DMG400001207 Solanum tuberosum HOM05D000065 ORTHO05D001606 9.8e-09 63.5 62 50.0
SGA_v2.0_scaffold104G30072 Striga asiatica HOM05D000065 ORTHO05D001606 9.8e-09 63.5 55 61.8
Nitab4.5_0008554g0040 Nicotiana tabacum HOM05D000065 ORTHO05D001606 1.3e-08 63.2 62 50.0
Ah.13g071290 Amaranthus hybridus HOM05D000065 ORTHO05D001606 1.7e-08 62.8 62 53.2
Medtr2g033930 Medicago truncatula HOM05D000065 ORTHO05D001606 1.7e-08 62.8 63 49.2
MBI18_g37566_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D001606 2.2e-08 62.4 64 45.3
PSO210G3910 Papaver somniferum HOM05D000065 ORTHO05D001606 2.2e-08 62.4 61 54.1
Psat1g160960 Pisum sativum HOM05D000065 ORTHO05D001606 2.2e-08 62.4 65 47.7
QL06p012478 Quercus lobata HOM05D000065 ORTHO05D001606 2.2e-08 62.4 61 50.8
MSTRG.3855 Avicennia marina HOM05D000065 ORTHO05D001606 2.8e-08 62.0 62 51.6
CiPaw.01G137700 Carya illinoinensis HOM05D000065 ORTHO05D001606 2.8e-08 62.0 62 50.0
QL06p012131 Quercus lobata HOM05D000065 ORTHO05D001606 2.8e-08 62.0 61 50.8
Cpa.g.sc1973.2 Carica papaya HOM05D000065 ORTHO05D001606 3.7e-08 61.6 62 51.6
PSO357G0102 Papaver somniferum HOM05D000065 ORTHO05D001606 3.7e-08 61.6 62 48.4
QL06p012463 Quercus lobata HOM05D000065 ORTHO05D001606 3.7e-08 61.6 61 50.8
TPR.G26545 Trifolium pratense HOM05D000065 ORTHO05D001606 3.7e-08 61.6 64 46.9
CANSAT64G1186 Cannabis sativa HOM05D000065 ORTHO05D001606 4.9e-08 61.2 68 44.1
Lj6C691G9 Lonicera japonica HOM05D000065 ORTHO05D001606 4.9e-08 61.2 62 53.2
Cc03_g00740 Coffea canephora HOM05D000065 ORTHO05D001606 6.3e-08 60.8 63 50.8
PSO170G3380 Papaver somniferum HOM05D000065 ORTHO05D001606 6.3e-08 60.8 62 48.4
VMungo0540G1510 Vigna mungo HOM05D000065 ORTHO05D001606 6.3e-08 60.8 91 42.9
AL507U10020 Arabidopsis lyrata HOM05D000065 ORTHO05D001606 8.3e-08 60.5 62 50.0
AL7G38860 Arabidopsis lyrata HOM05D000065 ORTHO05D001606 8.3e-08 60.5 62 50.0
CANSAT78G1611 Cannabis sativa HOM05D000065 ORTHO05D001606 8.3e-08 60.5 66 48.5
AUR62039271 Chenopodium quinoa HOM05D000065 ORTHO05D001606 8.3e-08 60.5 62 51.6
Dinv15161 Davidia involucrata HOM05D000065 ORTHO05D001606 8.3e-08 60.5 62 51.6
Rhsim02G0003400 Rhododendron simsii HOM05D000065 ORTHO05D001606 8.3e-08 60.5 62 48.4
vmacro08039 Vaccinium macrocarpon HOM05D000065 ORTHO05D001606 8.3e-08 60.5 63 50.8
ATR0228G001 Amborella trichopoda HOM05D000065 ORTHO05D001606 1.1e-07 60.1 56 53.6
CANSAT64G2127 Cannabis sativa HOM05D000065 ORTHO05D001606 1.1e-07 60.1 62 46.8
Eucgr.A00381 Eucalyptus grandis HOM05D000065 ORTHO05D001606 1.1e-07 60.1 61 47.5
AUR62016217 Chenopodium quinoa HOM05D000065 ORTHO05D001606 1.4e-07 59.7 62 50.0
Duzib052G0819 Durio zibethinus HOM05D000065 ORTHO05D001606 1.4e-07 59.7 62 48.4
Nn3g21756 Nelumbo nucifera HOM05D000065 ORTHO05D001606 1.4e-07 59.7 55 58.2
THA.LOC104820308 Tarenaya hassleriana HOM05D000065 ORTHO05D001606 1.4e-07 59.7 62 45.2
Thecc.04G302000 Theobroma cacao HOM05D000065 ORTHO05D001606 1.4e-07 59.7 62 48.4
TWI73G1130 Tripterygium wilfordii HOM05D000065 ORTHO05D001606 1.4e-07 59.7 62 50.0
ATR0329G038 Amborella trichopoda HOM05D000065 ORTHO05D001606 1.8e-07 59.3 56 53.6
arahy.Tifrunner.gnm1.ann1.6P44XN Arachis hypogaea HOM05D000065 ORTHO05D001606 1.8e-07 59.3 62 48.4
AUR62039270 Chenopodium quinoa HOM05D000065 ORTHO05D001606 1.8e-07 59.3 62 50.0
Hma1.2p1_0013F.1_g008470 Hydrangea macrophylla HOM05D000065 ORTHO05D001606 1.8e-07 59.3 62 50.0
Nitab4.5_0005565g0050 Nicotiana tabacum HOM05D000065 ORTHO05D001606 1.8e-07 59.3 62 46.8
vmacro15179 Vaccinium macrocarpon HOM05D000065 ORTHO05D001606 1.8e-07 59.3 56 53.6
VMungo0540G2331 Vigna mungo HOM05D000065 ORTHO05D001606 1.8e-07 59.3 66 48.5
Actinidia13354 Actinidia chinensis HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 50.0
Actinidia14255 Actinidia chinensis HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 48.4
Aqoxy6G02289 Aquilegia oxysepala HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 46.8
Cfa015306 Carpinus fangiana HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 48.4
Haze_01309 Corylus avellana HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 46.8
PGR031G1442 Punica granatum HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 45.2
Sc13g0006450 Simmondsia chinensis HOM05D000065 ORTHO05D001606 2.4e-07 58.9 62 46.8
Medtr2g033920 Medicago truncatula HOM05D000065 ORTHO05D001606 3.1e-07 58.5 63 47.6
Gohir.D10G179400 Gossypium hirsutum HOM05D000065 ORTHO05D001606 4.1e-07 58.2 62 48.4
PSO210G7385 Papaver somniferum HOM05D000065 ORTHO05D001606 4.1e-07 58.2 61 50.8
arahy.Tifrunner.gnm1.ann1.4BJ4TX Arachis hypogaea HOM05D000065 ORTHO05D001606 5.4e-07 57.8 62 46.8
Haze_01363 Corylus avellana HOM05D000065 ORTHO05D001606 5.4e-07 57.8 62 48.4
MD16G1152900 Malus domestica HOM05D000065 ORTHO05D001606 5.4e-07 57.8 62 48.4
Nitab4.5_0000177g0110 Nicotiana tabacum HOM05D000065 ORTHO05D001606 5.4e-07 57.8 61 47.5
PSO210G5948 Papaver somniferum HOM05D000065 ORTHO05D001606 5.4e-07 57.8 61 52.5
SEGI_15729 Sequoiadendron giganteum HOM05D000065 ORTHO05D001606 5.4e-07 57.8 52 53.8
CANSAT64G2849 Cannabis sativa HOM05D000065 ORTHO05D001606 7.0e-07 57.4 62 46.8
Carub.0007s2530 Capsella rubella HOM05D000065 ORTHO05D001606 7.0e-07 57.4 63 47.6
DCAR_030469 Daucus carota HOM05D000065 ORTHO05D001606 7.0e-07 57.4 62 45.2
Glyma.09G035000 Glycine max HOM05D000065 ORTHO05D001606 7.0e-07 57.4 61 50.8
Gorai.011G200700 Gossypium raimondii HOM05D000065 ORTHO05D001606 7.0e-07 57.4 62 46.8
TAR362G0088 Trochodendron aralioides HOM05D000065 ORTHO05D001606 7.0e-07 57.4 62 46.8
VMungo1215G1923 Vigna mungo HOM05D000065 ORTHO05D001606 7.0e-07 57.4 62 50.0
AL7G38840 Arabidopsis lyrata HOM05D000065 ORTHO05D001606 9.2e-07 57.0 62 48.4
CSS0035076 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D001606 9.2e-07 57.0 62 46.8
COL.COLO4_34606 Corchorus olitorius HOM05D000065 ORTHO05D001606 9.2e-07 57.0 62 45.2
Glyma.07G239400 Glycine max HOM05D000065 ORTHO05D001606 9.2e-07 57.0 62 51.6
PSO170G3945 Papaver somniferum HOM05D000065 ORTHO05D001606 9.2e-07 57.0 65 43.1
PSO210G2376 Papaver somniferum HOM05D000065 ORTHO05D001606 9.2e-07 57.0 65 43.1
Aqoxy5G03223 Aquilegia oxysepala HOM05D000065 ORTHO05D001606 1.2e-06 56.6 62 46.8
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.2e-06 56.6 31 83.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-06 56.6 31 83.9
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-06 56.6 31 83.9
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-06 56.6 31 83.9
FAN26G2797 Fragaria x ananassa HOM05D000065 ORTHO05D001606 1.2e-06 56.6 62 45.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-06 56.6 31 83.9
Glyma.15G139700 Glycine max HOM05D000065 ORTHO05D001606 1.2e-06 56.6 61 50.8
Glyma.17G034000 Glycine max HOM05D000065 ORTHO05D001606 1.2e-06 56.6 62 51.6
Phvul.003G114800 Phaseolus vulgaris HOM05D000065 ORTHO05D001606 1.2e-06 56.6 62 48.4
TAR365G0565 Trochodendron aralioides HOM05D000065 ORTHO05D001606 1.2e-06 56.6 64 43.8
AUR62015387 Chenopodium quinoa HOM05D000065 ORTHO05D001606 1.6e-06 56.2 57 45.6
ECA246G2320 Erigeron canadensis HOM05D000065 ORTHO05D001606 1.6e-06 56.2 64 48.4
FAN23G1429 Fragaria x ananassa HOM05D000065 ORTHO05D001606 1.6e-06 56.2 62 43.5
Manes.15G000500 Manihot esculenta HOM05D000065 ORTHO05D001606 1.6e-06 56.2 63 49.2
PSO210G3089 Papaver somniferum HOM05D000065 ORTHO05D001606 1.6e-06 56.2 61 52.5
Zm00001eb395980 Zea mays HOM05D000065 ORTHO05D001606 1.6e-06 56.2 52 53.8
Peaxi162Scf00228g00323 Petunia axillaris HOM05D000065 ORTHO05D001606 2.0e-06 55.8 62 45.2
Psat4g022720 Pisum sativum HOM05D000065 ORTHO05D001606 2.0e-06 55.8 62 46.8
CDE05G1894 Ceratophyllum demersum HOM05D000065 ORTHO05D001606 2.7e-06 55.5 62 48.4
CDE12G0531 Ceratophyllum demersum HOM05D000065 ORTHO05D001606 2.7e-06 55.5 46 54.3
ECA238G3014 Erigeron canadensis HOM05D000065 ORTHO05D001606 2.7e-06 55.5 62 45.2
Eucgr.H01970 Eucalyptus grandis HOM05D000065 ORTHO05D001606 2.7e-06 55.5 55 47.3
FvH4_1g14780 Fragaria vesca HOM05D000065 ORTHO05D001606 2.7e-06 55.5 62 43.5
FAN19G2479 Fragaria x ananassa HOM05D000065 ORTHO05D001606 2.7e-06 55.5 62 43.5
FAN28G0521 Fragaria x ananassa HOM05D000065 ORTHO05D001606 2.7e-06 55.5 62 43.5
QL06p012449 Quercus lobata HOM05D000065 ORTHO05D001606 2.7e-06 55.5 60 45.0
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.7e-06 55.5 31 80.6
Sp7g14730 Schrenkiella parvula HOM05D000065 ORTHO05D001606 2.7e-06 55.5 62 46.8
CDE11G0279 Ceratophyllum demersum HOM05D000065 ORTHO05D001606 3.5e-06 55.1 62 48.4
Lj4g0007187 Lotus japonicus HOM05D000065 ORTHO05D001606 3.5e-06 55.1 62 50.0
Phvul.006G118500 Phaseolus vulgaris HOM05D000065 ORTHO05D001606 3.5e-06 55.1 62 50.0
Prupe.7G142600 Prunus persica HOM05D000065 ORTHO05D001606 3.5e-06 55.1 62 41.9
BcaNung06743 Brassica carinata HOM05D000065 ORTHO05D001606 4.5e-06 54.7 62 45.2
CSS0013333 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D001606 4.5e-06 54.7 62 43.5
Thhalv10027022m.g Eutrema salsugineum HOM05D000065 ORTHO05D001606 4.5e-06 54.7 62 45.2
Glyma.15G139600 Glycine max HOM05D000065 ORTHO05D001606 4.5e-06 54.7 63 42.9
Potri.008G104600 Populus trichocarpa HOM05D000065 ORTHO05D001606 4.5e-06 54.7 62 43.5
Aqoxy5G01414 Aquilegia oxysepala HOM05D000065 ORTHO05D001606 5.9e-06 54.3 62 40.3
AUR62015388 Chenopodium quinoa HOM05D000065 ORTHO05D001606 5.9e-06 54.3 61 47.5
MELO3C020928.2 Cucumis melo HOM05D000065 ORTHO05D001606 5.9e-06 54.3 65 43.1
Gohir.A10G172900 Gossypium hirsutum HOM05D000065 ORTHO05D001606 5.9e-06 54.3 57 47.4
Lj4A137T57 Lonicera japonica HOM05D000065 ORTHO05D001606 5.9e-06 54.3 62 41.9
Zm00001eb330130 Zea mays HOM05D000065 ORTHO05D001606 5.9e-06 54.3 62 43.5
CsaV3_2G017250 Cucumis sativus L. HOM05D000065 ORTHO05D001606 7.8e-06 53.9 65 43.1
PSO170G4424 Papaver somniferum HOM05D000065 ORTHO05D001606 7.8e-06 53.9 69 42.0
QL06p012090 Quercus lobata HOM05D000065 ORTHO05D001606 7.8e-06 53.9 62 46.8
QL06p012431 Quercus lobata HOM05D000065 ORTHO05D001606 7.8e-06 53.9 62 46.8
SEGI_34329 Sequoiadendron giganteum HOM05D000065 ORTHO05D001606 7.8e-06 53.9 62 45.2
TAR362G0509 Trochodendron aralioides HOM05D000065 ORTHO05D001606 7.8e-06 53.9 64 43.8


User provided reference genes

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