Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 2.4e-96 355.5 185 100.0
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 2.8e-84 315.5 183 85.8
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.0e-83 311.6 183 84.7
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.3e-78 296.6 185 82.2
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 3.9e-78 295.0 185 81.6
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 1.6e-76 289.7 182 77.5
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 8.1e-76 287.3 182 79.1
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.1e-75 287.0 179 77.7
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.8e-75 286.2 178 82.0
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 1.2e-74 283.5 179 76.5
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.4e-72 276.6 177 75.7
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 1.9e-72 276.2 182 72.5
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.4e-72 275.8 182 73.6
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 3.2e-72 275.4 182 72.5
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 4.6e-71 271.6 179 73.7
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 6.0e-71 271.2 181 72.4
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 7.9e-71 270.8 179 72.1
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.0e-70 270.4 183 74.3
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.3e-70 270.0 183 74.3
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.8e-70 269.6 182 73.6
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 3.0e-70 268.9 182 71.4
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 3.0e-70 268.9 182 71.4
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 6.7e-70 267.7 181 70.7
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 6.7e-70 267.7 181 70.7
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 8.7e-70 267.3 183 73.2
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.1e-69 266.9 181 71.3
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.5e-69 266.5 182 70.9
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 2.5e-69 265.8 184 69.0
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.3e-69 265.0 176 72.2
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 4.3e-69 265.0 177 71.8
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 7.4e-69 264.2 176 71.6
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.6e-68 263.1 182 70.9
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.6e-68 263.1 182 70.9
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 1.6e-68 263.1 176 72.2
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 2.1e-68 262.7 181 69.6
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 2.1e-68 262.7 184 70.7
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 2.1e-68 262.7 184 70.7
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 6.2e-68 261.2 181 69.1
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 8.1e-68 260.8 183 68.3
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.1e-67 260.4 182 70.3
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 1.4e-67 260.0 181 70.2
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.4e-67 260.0 183 69.9
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 67.9
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 2.4e-67 259.2 183 67.8
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 2.4e-67 259.2 181 69.1
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 4.0e-67 258.5 182 70.3
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 5.3e-67 258.1 185 65.9
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 5.3e-67 258.1 174 72.4
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 1.2e-66 256.9 182 69.8
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 1.2e-66 256.9 182 69.8
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 1.2e-66 256.9 182 69.8
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 1.5e-66 256.5 187 69.5
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.5e-66 256.5 181 70.2
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.5e-66 256.5 182 68.1
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.5e-66 256.5 182 70.3
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 1.5e-66 256.5 179 70.9
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 2.0e-66 256.1 187 70.1
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.0e-66 256.1 183 67.2
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 2.6e-66 255.8 178 70.8
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.4e-66 255.4 183 67.8
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 4.5e-66 255.0 183 67.2
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 4.5e-66 255.0 183 67.8
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 7.6e-66 254.2 181 69.6
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 7.6e-66 254.2 187 69.5
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 7.6e-66 254.2 181 70.2
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 7.6e-66 254.2 172 72.7
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 9.9e-66 253.8 178 70.8
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.3e-65 253.4 178 69.7
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.7e-65 253.1 178 71.3
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 1.7e-65 253.1 185 67.6
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.7e-65 253.1 182 69.2
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.7e-65 253.1 179 70.4
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 2.9e-65 252.3 180 67.2
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.8e-65 251.9 183 68.3
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 3.8e-65 251.9 184 66.3
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 8.4e-65 250.8 183 66.1
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 8.4e-65 250.8 179 69.8
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 1.1e-64 250.4 183 66.7
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 1.9e-64 249.6 185 65.4
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 3.2e-64 248.8 181 65.7
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 4.2e-64 248.4 164 73.2
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 4.2e-64 248.4 180 66.1
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 5.5e-64 248.1 179 66.5
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 5.5e-64 248.1 174 66.7
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 1.2e-63 246.9 181 64.6
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.1e-63 246.1 180 66.1
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 1.0e-62 243.8 184 63.6
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.8e-62 243.0 179 62.6
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 8.7e-62 240.7 178 65.7
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 2.5e-61 239.2 180 63.9
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 3.3e-61 238.8 176 63.1
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.1e-59 233.8 179 63.7
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.5e-58 229.9 176 64.8
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.0e-58 229.6 180 63.9
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 2.9e-57 225.7 178 63.5
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 3.8e-57 225.3 119 99.2
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 4.2e-56 221.9 166 66.3
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.5e-55 218.8 178 58.4
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 6.0e-55 218.0 187 59.4
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.7e-49 199.9 182 51.6
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.4e-48 196.8 200 51.5
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.4e-48 196.8 162 65.4
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 9.3e-48 194.1 159 64.8
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.1e-47 191.4 199 50.3
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 6.1e-47 191.4 175 55.4
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.0e-46 190.7 192 52.1
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.4e-45 184.5 149 63.1
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.6e-44 183.3 137 65.0
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 6.1e-39 164.9 108 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 2.6e-37 159.5 177 45.2
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 7.4e-37 157.9 169 49.1
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.8e-36 156.0 178 44.9
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 3.1e-35 152.5 105 73.3
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.8e-33 145.6 183 43.2
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.8e-33 145.6 181 42.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.1e-31 139.8 164 45.1
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 2.7e-31 139.4 175 44.6
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 6.3e-28 128.3 86 68.6
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.8e-27 126.7 159 42.1
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 5.9e-26 121.7 182 41.8
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.1e-23 111.7 95 57.9
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.1e-19 99.4 75 65.3
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 8.5e-17 91.3 84 54.8
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 2.4e-11 73.2 71 45.1
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.6e-07 60.5 145 30.3
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.6e-07 60.5 145 30.3
Hund26161 Selenicereus undatus HOM05D003111 ORTHO05D003502 6.1e-07 58.5 162 25.9
Pp3c18_21320 Physcomitrium patens HOM05D003111 ORTHO05D003502 6.8e-06 55.1 121 29.8
CDE07G1813 Ceratophyllum demersum HOM05D003111 ORTHO05D003502 8.8e-06 54.7 130 26.9
RcHm_v2.0_Chr3g0459631 Rosa chinensis HOM05D000172 ORTHO05D000273 8.8e-06 54.7 167 28.7


User provided reference genes

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