Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 1.1e-60 236.5 123 100.0
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.9e-57 225.7 119 99.2
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.0e-50 201.8 119 85.7
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 3.9e-50 201.4 119 85.7
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 3.1e-47 191.8 116 82.8
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.4e-46 188.3 116 80.2
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 9.9e-46 186.8 116 79.3
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 8.4e-45 183.7 116 79.3
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 9.3e-44 180.3 116 77.6
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 9.3e-44 180.3 116 77.6
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 9.3e-44 180.3 118 75.4
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 9.3e-44 180.3 119 73.9
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 1.6e-43 179.5 114 77.2
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 2.7e-43 178.7 119 79.0
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.7e-43 178.7 119 79.0
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.7e-43 178.7 119 79.0
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 2.7e-43 178.7 115 76.5
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 3.5e-43 178.3 119 73.9
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 7.9e-43 177.2 116 76.7
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 7.9e-43 177.2 116 76.7
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 7.9e-43 177.2 116 76.7
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 7.9e-43 177.2 116 75.9
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.3e-42 176.4 116 74.1
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 3.0e-42 175.3 116 73.3
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 3.0e-42 175.3 121 75.2
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 3.0e-42 175.3 117 75.2
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 3.0e-42 175.3 116 75.0
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 3.9e-42 174.9 116 74.1
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 3.9e-42 174.9 116 75.0
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 8.7e-42 173.7 121 76.0
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 8.7e-42 173.7 117 72.6
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.1e-41 173.3 121 76.0
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 1.1e-41 173.3 116 75.0
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 1.1e-41 173.3 116 74.1
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.5e-41 172.9 121 74.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 1.9e-41 172.6 116 72.4
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 2.5e-41 172.2 121 73.6
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 2.5e-41 172.2 116 73.3
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 2.5e-41 172.2 116 73.3
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.3e-41 171.8 117 71.8
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 4.3e-41 171.4 116 74.1
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 4.3e-41 171.4 115 74.8
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 4.3e-41 171.4 119 70.6
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 5.6e-41 171.0 116 69.8
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 5.6e-41 171.0 116 69.8
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.3e-40 169.9 119 69.7
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.3e-40 169.9 118 71.2
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.6e-40 169.5 116 69.8
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 2.8e-40 168.7 117 74.4
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 3.7e-40 168.3 112 72.3
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 3.7e-40 168.3 118 70.3
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.8e-40 167.9 112 72.3
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.8e-40 167.9 118 70.3
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.1e-39 166.8 114 71.9
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 1.4e-39 166.4 112 72.3
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.8e-39 166.0 115 71.3
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 3.1e-39 165.2 118 70.3
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 3.1e-39 165.2 118 70.3
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 4.0e-39 164.9 116 69.0
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 5.3e-39 164.5 113 73.5
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 6.9e-39 164.1 119 68.1
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 6.9e-39 164.1 119 67.2
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 6.9e-39 164.1 119 68.1
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 6.9e-39 164.1 114 72.8
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 6.9e-39 164.1 112 74.1
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.2e-38 163.3 116 71.6
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.5e-38 162.9 112 73.2
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 2.0e-38 162.5 116 68.1
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 2.0e-38 162.5 114 72.8
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 4.5e-38 161.4 114 67.5
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 4.5e-38 161.4 116 69.8
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 4.5e-38 161.4 119 65.5
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 5.8e-38 161.0 116 68.1
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 7.6e-38 160.6 116 67.2
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.7e-37 159.5 115 68.7
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 2.2e-37 159.1 116 68.1
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 2.2e-37 159.1 116 66.4
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 4.9e-37 157.9 114 69.3
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 4.9e-37 157.9 116 68.1
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 8.4e-37 157.1 115 68.7
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 8.4e-37 157.1 118 67.8
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.1e-36 156.8 118 67.8
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 1.4e-36 156.4 117 65.0
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 1.9e-36 156.0 114 69.3
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.2e-36 155.2 117 66.7
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 4.2e-36 154.8 119 64.7
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 4.2e-36 154.8 113 65.5
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 5.5e-36 154.5 105 74.3
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 7.1e-36 154.1 115 63.5
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 7.1e-36 154.1 119 63.9
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 1.2e-35 153.3 116 64.7
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.2e-35 153.3 110 66.4
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.1e-35 152.5 115 64.3
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.6e-35 151.4 114 64.9
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 1.3e-34 149.8 114 62.3
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 1.3e-34 149.8 116 65.5
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.8e-34 149.4 116 60.3
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 3.0e-34 148.7 112 66.1
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 9.6e-33 143.7 116 62.1
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.6e-32 142.9 114 61.4
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 3.7e-32 141.7 112 62.5
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.4e-31 139.8 125 57.6
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.6e-27 126.3 116 53.4
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.7e-27 125.6 136 49.3
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.3e-26 122.5 135 48.1
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.9e-26 121.7 128 50.8
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 3.3e-25 118.6 109 55.0
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 2.0e-22 109.4 87 65.5
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 2.6e-22 109.0 87 65.5
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.6e-19 99.8 119 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 6.1e-19 97.8 119 42.0
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 5.1e-18 94.7 116 41.4
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 7.4e-17 90.9 107 45.8
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 3.1e-15 85.5 113 41.6
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 7.7e-14 80.9 122 38.5
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.9e-13 79.0 97 40.2
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.1e-12 77.0 129 38.0
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.6e-11 72.0 56 58.9
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 2.6e-09 65.9 42 73.8
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.2e-08 62.8 117 37.6
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.1e-07 60.5 43 69.8


User provided reference genes

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