Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 0.0e+00 1110.1 565 100.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.0e-302 1040.4 566 93.8
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.9e-301 1038.5 566 93.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.2e-297 1025.0 581 91.2
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.3e-297 1023.5 589 89.8
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 5.4e-296 1020.4 566 91.3
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.8e-288 995.3 562 90.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 9.2e-288 993.0 559 90.2
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 9.2e-280 966.5 565 86.2
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.1e-272 943.0 559 84.3
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 9.2e-272 939.9 561 82.2
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.2e-271 939.5 565 82.8
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.0e-270 936.4 564 82.8
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.3e-270 935.3 633 76.8
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.0e-270 934.9 559 83.9
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 6.6e-270 933.7 559 83.7
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.5e-269 931.8 559 83.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 4.3e-269 931.0 559 83.4
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.1e-268 928.7 565 82.1
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 3.6e-268 927.9 565 81.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.7e-268 927.5 566 81.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.1e-267 926.4 565 82.3
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 1.4e-267 926.0 561 82.4
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.8e-267 925.6 556 82.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.5e-266 920.2 559 82.3
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.2e-265 918.7 559 82.3
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.7e-265 917.9 566 80.9
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 6.4e-265 917.1 569 80.5
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.3e-265 916.8 559 81.9
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.4e-264 916.0 563 80.8
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 5.4e-264 914.1 560 82.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.6e-263 912.5 565 80.9
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.1e-263 912.1 557 81.9
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.5e-263 911.4 557 81.9
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.1e-262 907.5 558 81.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.1e-261 906.4 565 79.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 4.3e-261 904.4 565 79.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.2e-260 902.9 561 80.4
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 6.2e-260 900.6 549 80.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.4e-259 899.4 561 79.5
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.8e-259 899.0 559 80.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.8e-259 899.0 565 78.8
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.1e-259 898.3 558 80.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.8e-259 897.1 559 80.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.0e-258 895.6 549 81.1
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 2.6e-258 895.2 551 80.6
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.7e-257 892.5 481 93.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 6.4e-257 890.6 560 80.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 8.4e-257 890.2 549 80.5
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 8.4e-257 890.2 565 78.8
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 4.1e-256 887.9 560 79.8
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.1e-255 885.6 581 76.6
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 6.0e-255 884.0 549 79.8
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 7.8e-255 883.6 558 79.6
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.1e-253 879.8 562 77.8
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.5e-253 879.4 562 77.9
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 3.3e-253 878.2 538 80.9
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.3e-253 878.2 604 74.7
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 5.6e-253 877.5 547 81.4
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.7e-252 874.4 555 78.7
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.4e-251 872.1 565 77.5
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.5e-250 869.4 555 78.9
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.5e-250 869.4 565 78.2
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 3.4e-250 868.2 559 77.5
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.3e-249 866.3 566 77.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.2e-249 865.5 559 77.1
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 3.8e-249 864.8 555 79.3
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 8.4e-249 863.6 565 77.5
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 8.4e-249 863.6 565 78.2
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.9e-248 862.4 552 78.8
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 4.2e-248 861.3 565 77.2
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 5.4e-248 860.9 555 78.7
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 2.1e-247 859.0 552 78.3
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.7e-247 858.6 558 77.2
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 3.5e-247 858.2 555 78.6
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 7.8e-247 857.1 552 78.3
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.7e-246 855.9 555 77.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.9e-245 852.4 559 76.4
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 9.6e-245 850.1 558 76.0
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.8e-244 848.6 555 77.5
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 3.6e-244 848.2 562 75.6
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 8.1e-244 847.0 554 78.0
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 8.1e-244 847.0 554 78.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 2.4e-243 845.5 566 76.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 5.3e-243 844.3 554 77.6
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.3e-243 844.3 553 79.4
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.6e-242 842.0 556 78.1
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 7.6e-242 840.5 552 77.2
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.6e-242 840.5 553 79.0
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-241 839.7 552 76.8
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-241 839.3 552 76.8
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.1e-240 836.6 558 74.4
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.2e-240 835.1 603 71.3
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 7.9e-239 830.5 534 78.5
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.9e-238 828.2 562 75.3
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.1e-237 826.6 565 74.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.9e-237 825.9 552 76.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 3.3e-237 825.1 552 76.6
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 4.3e-237 824.7 520 77.7
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 5.6e-237 824.3 556 75.5
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 9.6e-237 823.5 558 76.5
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 3.4e-234 815.1 533 77.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.4e-234 815.1 555 75.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.5e-234 814.7 536 75.6
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.8e-233 811.6 601 70.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 5.5e-232 807.7 557 74.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.3e-232 807.0 612 70.6
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-231 806.2 550 74.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 9.6e-229 797.0 557 70.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.7e-228 795.0 547 75.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.1e-227 793.5 555 72.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.4e-227 792.3 555 73.5
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.4e-227 792.3 559 72.6
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 3.1e-227 792.0 632 65.5
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.0e-222 776.9 558 70.4
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.6e-220 769.6 557 68.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 4.6e-215 751.5 454 82.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.5e-213 746.5 576 66.7
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.0e-205 719.5 556 68.0
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 7.4e-205 717.6 479 76.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.2e-201 706.1 480 73.5
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.2e-201 706.1 505 67.1
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.6e-197 692.6 559 61.7
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 5.0e-185 651.7 549 59.9
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 8.8e-182 641.0 560 58.8
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.2e-176 621.3 413 75.1
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.6e-169 598.2 365 80.0
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.8e-166 590.1 394 74.6
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.9e-166 587.8 394 74.1
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 9.8e-165 584.3 394 73.9
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 9.8e-165 584.3 359 83.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.0e-145 521.2 557 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.3e-137 493.4 533 46.9
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.2e-130 471.1 324 74.1
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.6e-130 470.7 272 85.3
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-117 427.9 335 67.2
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.1e-102 376.3 220 81.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-83 314.3 194 77.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.4e-78 298.1 200 79.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 6.5e-68 262.7 195 68.7
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 9.2e-54 215.7 141 76.6
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-51 207.6 152 67.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-48 198.0 147 70.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.3e-44 184.5 117 76.9
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-43 181.4 189 55.6
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.4e-32 144.1 85 90.6
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.5e-29 134.0 114 62.3
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.8e-26 124.4 83 75.9
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 3.4e-24 117.5 92 60.9
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.8e-23 114.0 79 70.9
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 7.1e-22 109.8 109 54.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.0e-21 106.7 90 57.8
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 8.1e-10 69.7 55 60.0
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.4e-06 58.2 112 33.9
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 3.2e-06 57.8 358 22.6
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 7.1e-06 56.6 34 73.5


User provided reference genes

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