Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045701 Rosa chinensis HOM05D067305 ORTHO05D005628 2.2e-51 205.3 101 100.0
RcHm_v2.0_Chr5g0045731 Rosa chinensis HOM05D004536 ORTHO05D005628 3.9e-24 114.8 57 96.5
RcHm_v2.0_Chr5g0045951 Rosa chinensis HOM05D004536 ORTHO05D005628 3.9e-24 114.8 57 96.5
RcHm_v2.0_Chr5g0046521 Rosa chinensis HOM05D004536 ORTHO05D005628 3.9e-24 114.8 57 96.5
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 3.9e-24 114.8 57 96.5
RcHm_v2.0_Chr5g0046501 Rosa chinensis HOM05D067305 ORTHO05D344522 6.5e-19 97.4 49 98.0
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.8e-16 89.4 57 80.7
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.8e-16 89.4 57 80.7
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 3.9e-16 88.2 57 78.9
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 5.1e-16 87.8 57 78.9
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 1.1e-15 86.7 51 78.4
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 3.3e-15 85.1 51 78.4
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 5.7e-15 84.3 51 78.4
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 9.7e-15 83.6 54 74.1
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 1.3e-14 83.2 54 74.1
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 1.7e-14 82.8 51 76.5
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 1.7e-14 82.8 55 72.7
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 2.2e-14 82.4 54 74.1
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 2.8e-14 82.0 51 72.5
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 2.8e-14 82.0 49 79.6
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 2.8e-14 82.0 54 70.4
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 4.8e-14 81.3 51 76.5
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 6.3e-14 80.9 51 72.5
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 1.1e-13 80.1 54 70.4
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 1.1e-13 80.1 51 72.5
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 1.4e-13 79.7 49 75.5
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 1.4e-13 79.7 53 73.6
MD11G1302700 Malus domestica HOM05D004536 ORTHO05D005628 1.8e-13 79.3 50 76.0
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 2.4e-13 79.0 51 72.5
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 3.1e-13 78.6 50 70.0
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 4.1e-13 78.2 50 68.0
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 4.1e-13 78.2 50 70.0
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 7.0e-13 77.4 46 76.1
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 7.0e-13 77.4 44 84.1
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 7.0e-13 77.4 51 68.6
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 9.1e-13 77.0 50 72.0
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 9.1e-13 77.0 49 73.5
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 1.2e-12 76.6 51 68.6
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 1.2e-12 76.6 54 64.8
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 1.2e-12 76.6 51 70.6
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 1.2e-12 76.6 51 68.6
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.6e-12 76.3 53 67.9
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 1.6e-12 76.3 50 68.0
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 1.6e-12 76.3 53 66.0
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 1.6e-12 76.3 49 71.4
COL.COLO4_23401 Corchorus olitorius HOM05D004536 ORTHO05D005628 2.0e-12 75.9 53 73.6
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 2.0e-12 75.9 47 72.3
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 2.0e-12 75.9 50 68.0
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 2.0e-12 75.9 50 68.0
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 2.0e-12 75.9 49 73.5
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 2.6e-12 75.5 51 66.7
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 2.6e-12 75.5 51 66.7
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 2.6e-12 75.5 46 76.1
Cpa.g.sc9.197 Carica papaya HOM05D004536 ORTHO05D005628 3.5e-12 75.1 51 68.6
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 3.5e-12 75.1 47 70.2
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 3.5e-12 75.1 50 68.0
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 3.5e-12 75.1 51 66.7
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 3.5e-12 75.1 53 67.9
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 4.5e-12 74.7 51 70.6
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 5.9e-12 74.3 53 69.8
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 5.9e-12 74.3 54 61.1
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 5.9e-12 74.3 51 66.7
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 7.7e-12 73.9 56 60.7
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 7.7e-12 73.9 47 70.2
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 7.7e-12 73.9 47 70.2
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 7.7e-12 73.9 53 69.8
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 1.3e-11 73.2 51 64.7
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 1.7e-11 72.8 51 66.7
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 1.7e-11 72.8 51 66.7
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 1.7e-11 72.8 51 66.7
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 1.7e-11 72.8 46 71.7
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 2.2e-11 72.4 51 64.7
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 2.2e-11 72.4 51 64.7
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 2.9e-11 72.0 51 64.7
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 2.9e-11 72.0 44 75.0
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 3.8e-11 71.6 51 64.7
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 3.8e-11 71.6 51 64.7
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 3.8e-11 71.6 54 64.8
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 3.8e-11 71.6 51 64.7
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 3.8e-11 71.6 49 65.3
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 6.5e-11 70.9 51 62.7
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 6.5e-11 70.9 51 64.7
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 6.5e-11 70.9 49 65.3
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 8.5e-11 70.5 51 66.7
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 8.5e-11 70.5 51 66.7
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 8.5e-11 70.5 51 64.7
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 8.5e-11 70.5 46 67.4
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 8.5e-11 70.5 50 66.0
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 1.1e-10 70.1 51 60.8
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 1.9e-10 69.3 53 66.0
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 1.9e-10 69.3 50 66.0
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 2.5e-10 68.9 51 62.7
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 3.2e-10 68.6 51 64.7
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 5.5e-10 67.8 47 66.0
Migut.K00643 Erythranthe guttata HOM05D004536 ORTHO05D005628 5.5e-10 67.8 49 61.2
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 7.2e-10 67.4 47 63.8
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 1.2e-09 66.6 38 81.6
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 2.7e-09 65.5 47 63.8
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 2.7e-09 65.5 39 71.8
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 4.7e-09 64.7 47 61.7
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 1.0e-08 63.5 50 58.0
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 1.5e-07 59.7 51 54.9
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 5.7e-07 57.8 71 43.7
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 7.5e-07 57.4 77 42.9
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 7.5e-07 57.4 52 48.1
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 9.7e-07 57.0 94 40.4
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 4.8e-06 54.7 49 46.9
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 8.2e-06 53.9 45 57.8
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 8.2e-06 53.9 43 55.8
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 8.2e-06 53.9 45 55.6


User provided reference genes

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