Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.9e-52 208.0 114 100.0
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 7.5e-48 193.7 122 91.0
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.2e-47 192.2 119 90.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.2e-47 192.2 119 90.8
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.3e-47 190.3 119 89.9
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 4.6e-37 157.9 117 76.1
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 7.8e-37 157.1 113 77.9
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 1.7e-36 156.0 119 73.9
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 8.6e-36 153.7 119 72.3
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.1e-35 153.3 115 73.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 4.3e-35 151.4 117 72.6
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.6e-35 151.0 120 70.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 7.3e-35 150.6 116 76.7
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.5e-35 150.2 120 69.2
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.6e-34 149.4 116 73.3
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.8e-34 148.7 119 73.9
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 4.7e-34 147.9 119 68.9
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.7e-34 147.9 119 73.9
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.2e-32 143.3 116 69.8
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 69.4
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.2e-32 143.3 114 69.3
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.5e-32 142.9 113 72.6
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.0e-32 142.5 120 66.7
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.6e-32 142.1 116 69.8
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.4e-32 141.7 118 66.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 5.8e-32 141.0 118 69.5
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.8e-32 141.0 113 67.3
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 9.9e-32 140.2 116 72.4
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.7e-31 139.4 117 68.4
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 3.8e-31 138.3 128 66.4
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 3.8e-31 138.3 120 67.5
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 6.4e-31 137.5 120 68.3
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.1e-30 136.7 115 68.7
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.4e-30 136.3 119 67.2
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.4e-30 136.3 119 66.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 1.9e-30 136.0 121 67.8
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.4e-30 135.6 111 67.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.4e-30 135.6 121 66.1
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 4.1e-30 134.8 119 64.7
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 5.4e-30 134.4 120 67.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 5.4e-30 134.4 120 67.5
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 7.1e-30 134.0 119 66.4
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 9.2e-30 133.7 112 70.5
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.2e-29 133.3 117 67.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.6e-29 132.9 120 66.7
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 2.1e-29 132.5 118 65.3
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.1e-29 132.5 120 67.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 2.1e-29 132.5 115 64.3
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.7e-29 132.1 121 66.1
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.7e-29 132.1 118 66.9
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.6e-29 131.3 113 65.5
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 4.6e-29 131.3 120 65.8
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.0e-29 131.0 117 67.5
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-28 130.2 113 64.6
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.7e-28 129.4 113 68.1
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.7e-28 129.4 120 65.8
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.3e-28 129.0 117 64.1
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 3.9e-28 128.3 117 67.5
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.1e-28 127.9 80 85.0
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.1e-28 127.9 118 65.3
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 5.1e-28 127.9 119 66.4
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 5.1e-28 127.9 115 62.6
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 5.1e-28 127.9 115 62.6
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.1e-28 127.9 112 65.2
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 8.6e-28 127.1 116 63.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.1e-27 126.7 118 65.3
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.1e-27 126.7 117 63.2
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-27 126.3 116 64.7
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.5e-27 126.3 117 64.1
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.9e-27 125.9 116 64.7
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.9e-27 125.9 120 62.5
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.9e-27 125.9 111 62.2
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.5e-27 125.6 120 64.2
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 7.3e-27 124.0 120 61.7
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 9.6e-27 123.6 109 66.1
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 2.1e-26 122.5 117 63.2
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 3.6e-26 121.7 102 68.6
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 3.6e-26 121.7 125 60.0
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.2e-26 120.9 110 65.5
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 6.2e-26 120.9 111 61.3
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 5.2e-25 117.9 117 62.4
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 5.2e-25 117.9 115 60.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 8.9e-25 117.1 117 61.5
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 4.4e-24 114.8 110 61.8
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.9e-22 109.4 115 58.3
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.4e-22 109.0 125 57.6
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.6e-21 106.3 111 56.8
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.6e-21 106.3 115 57.4
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.1e-21 105.9 108 58.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.1e-21 105.9 113 58.4
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 7.8e-21 104.0 153 49.0
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.7e-20 102.8 119 52.1
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 2.3e-20 102.4 119 51.3
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 3.0e-20 102.1 120 57.5
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.0e-20 102.1 115 57.4
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 5.1e-20 101.3 115 55.7
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 6.6e-20 100.9 118 55.1
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 6.6e-20 100.9 110 58.2
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 6.6e-20 100.9 122 52.5
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 8.7e-20 100.5 121 56.2
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 8.7e-20 100.5 119 57.1
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 8.7e-20 100.5 119 56.3
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.1e-19 100.1 116 55.2
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.5e-19 99.8 115 54.8
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.5e-19 99.8 123 55.3
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.5e-19 99.0 115 53.9
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 2.5e-19 99.0 120 55.8
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 2.5e-19 99.0 120 55.8
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 2.5e-19 99.0 120 55.8
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 4.3e-19 98.2 112 55.4
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 5.6e-19 97.8 110 57.3
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.6e-19 97.1 78 78.2
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-18 96.3 119 54.6
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.6e-18 96.3 114 54.4
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.6e-18 96.3 119 54.6
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.6e-18 96.3 119 54.6
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.6e-18 96.3 114 54.4
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.6e-18 96.3 118 53.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.1e-18 95.9 113 52.2
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-17 93.6 118 52.5
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 4.0e-17 91.7 119 54.6
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.5e-16 89.7 80 65.0
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.0e-16 89.4 86 59.3
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.8e-16 87.8 80 63.8
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 7.6e-16 87.4 120 51.7
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 9.9e-16 87.0 122 48.4
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.2e-15 85.9 80 63.8
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.4e-15 84.3 69 71.0
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.4e-14 82.4 112 47.3
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.6e-13 79.7 110 45.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 2.7e-13 79.0 105 51.4
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.0e-12 77.0 76 60.5
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.3e-12 75.9 115 45.2
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 3.9e-12 75.1 84 52.4
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.1e-12 74.7 71 62.0
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.1e-11 73.6 84 52.4
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.9e-11 72.8 100 47.0
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.6e-11 71.2 64 59.4
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.6e-11 71.2 64 59.4
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 7.4e-11 70.9 57 75.4
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.8e-10 68.2 195 33.8
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 6.9e-09 64.3 113 43.4
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 9.0e-09 63.9 78 51.3
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.5e-08 63.2 65 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.8e-07 58.5 125 36.0
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 4.2e-06 55.1 48 66.7
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 5.5e-06 54.7 34 82.4
Mapoly0044s0081 Marchantia polymorpha HOM05D004934 ORTHO05D005924 5.5e-06 54.7 91 47.3


User provided reference genes

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