Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.1e-115 419.1 221 100.0
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.2e-97 360.1 207 93.7
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 8.4e-88 327.4 200 91.0
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 7.2e-87 324.3 187 93.6
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 1.9e-84 316.2 187 90.4
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.9e-84 316.2 187 89.8
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.9e-84 316.2 187 90.4
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 9.7e-84 313.9 187 89.3
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 8.5e-80 300.8 179 88.3
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 3.2e-79 298.9 179 87.7
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 4.8e-75 285.0 179 82.1
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 1.1e-74 283.9 179 81.6
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.4e-74 283.5 179 81.6
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 3.1e-74 282.3 179 81.0
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 5.3e-74 281.6 179 81.0
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 2.0e-73 279.6 179 79.9
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 3.4e-73 278.9 179 79.9
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.3e-72 276.9 179 79.9
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 2.9e-72 275.8 173 80.9
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 3.8e-72 275.4 179 78.8
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 5.0e-72 275.0 173 80.9
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 6.5e-72 274.6 173 79.2
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 8.5e-72 274.2 179 77.7
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 1.4e-71 273.5 178 78.1
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.9e-71 273.1 173 81.5
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.9e-71 273.1 201 71.1
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.9e-71 273.1 201 71.1
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 2.5e-71 272.7 178 77.5
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 3.2e-71 272.3 179 78.8
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.2e-70 270.4 179 77.7
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 6.1e-70 268.1 179 75.4
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 6.1e-70 268.1 173 78.6
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 7.9e-70 267.7 179 78.2
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.0e-69 267.3 178 75.3
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.0e-69 267.3 173 77.5
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 1.0e-69 267.3 179 76.0
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.8e-69 266.5 179 76.0
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 3.0e-69 265.8 187 73.3
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 3.9e-69 265.4 178 74.2
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 2.0e-68 263.1 188 75.5
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.6e-68 262.7 179 74.9
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 3.3e-68 262.3 173 76.3
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 4.4e-68 261.9 172 76.7
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 5.7e-68 261.5 179 75.4
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 5.7e-68 261.5 201 66.7
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 5.7e-68 261.5 179 74.3
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 7.4e-68 261.2 179 76.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.3e-67 260.4 179 73.7
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.7e-67 260.0 172 75.6
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 4.8e-67 258.5 179 72.6
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 4.8e-67 258.5 179 75.4
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 8.2e-67 257.7 179 74.3
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.4e-66 256.9 173 74.6
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 9.1e-66 254.2 179 72.6
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.2e-65 253.8 179 73.2
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.6e-65 253.4 179 73.2
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 7.7e-65 251.1 172 70.9
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 7.7e-65 251.1 187 70.1
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 7.7e-65 251.1 173 71.7
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.2e-64 249.6 179 71.5
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 3.8e-64 248.8 179 70.9
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 3.8e-64 248.8 179 72.1
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 3.8e-64 248.8 179 71.5
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 6.5e-64 248.1 179 71.5
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 8.5e-64 247.7 179 71.5
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.9e-63 246.5 187 67.9
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.9e-63 246.5 187 67.9
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.9e-63 246.5 187 67.9
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.9e-63 246.5 179 70.9
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 7.2e-63 244.6 179 69.8
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 9.4e-63 244.2 179 70.9
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 9.4e-63 244.2 160 77.5
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.6e-62 243.4 187 67.9
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 4.7e-62 241.9 179 69.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 8.0e-62 241.1 189 65.1
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.3e-61 239.6 182 68.7
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 8.8e-61 237.7 187 66.3
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.1e-60 237.3 171 69.6
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 2.0e-60 236.5 187 65.8
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.7e-59 233.4 201 60.7
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 1.7e-59 233.4 201 60.7
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 2.2e-59 233.0 201 60.2
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.8e-59 232.6 182 64.3
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.8e-59 232.6 182 63.2
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 3.7e-59 232.3 190 61.6
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 1.4e-58 230.3 178 67.4
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.4e-58 230.3 176 66.5
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.7e-57 226.1 171 66.1
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 4.5e-57 225.3 184 63.0
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 1.0e-56 224.2 179 64.8
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 8.5e-56 221.1 205 56.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 3.2e-55 219.2 203 61.1
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 5.5e-55 218.4 179 62.6
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 8.0e-54 214.5 212 56.1
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.0e-53 214.2 176 60.8
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 4.0e-53 212.2 184 58.2
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 7.5e-52 208.0 176 60.2
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.2e-51 206.5 141 73.8
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.2e-51 206.5 141 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 3.7e-51 205.7 184 58.2
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 6.3e-51 204.9 166 67.5
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 5.4e-50 201.8 179 64.2
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 1.7e-48 196.8 178 59.0
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.5e-47 193.7 184 54.3
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.5e-47 193.0 172 58.7
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.5e-47 193.0 134 73.9
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 1.4e-45 187.2 164 59.1
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 4.4e-44 182.2 148 62.8
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 9.8e-44 181.0 149 61.7
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 2.9e-40 169.5 112 77.7
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 8.9e-37 157.9 187 50.3
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 8.0e-30 134.8 184 42.9
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 8.9e-29 131.3 119 58.0
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.5e-28 130.6 118 59.3
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 2.6e-28 129.8 95 67.4
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.0e-24 116.3 79 75.9
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.6e-24 114.8 79 73.4
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 1.6e-22 110.5 177 40.1
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 6.2e-22 108.6 190 35.3
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 5.2e-21 105.5 182 44.0
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 4.7e-14 82.4 61 68.9
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.2e-12 77.8 62 59.7
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 3.3e-07 59.7 46 67.4
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 4.7e-06 55.8 60 51.7


User provided reference genes

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