Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045301 Rosa chinensis HOM05D000490 ORTHO05D001398 7.1e-23 109.8 57 100.0
RcHm_v2.0_Chr1g0318921 Rosa chinensis HOM05D000490 ORTHO05D001398 5.7e-20 100.1 56 94.6
RcHm_v2.0_Chr3g0461651 Rosa chinensis HOM05D000490 ORTHO05D001398 8.2e-19 96.3 56 92.9
RcHm_v2.0_Chr2g0174561 Rosa chinensis HOM05D000490 ORTHO05D001398 2.2e-16 88.2 56 89.3
RcHm_v2.0_Chr2g0165361 Rosa chinensis HOM05D000490 ORTHO05D001398 1.1e-15 85.9 56 87.5
FvH4_6g10630 Fragaria vesca HOM05D000490 ORTHO05D001398 9.3e-15 82.8 56 85.7
FAN02G1377 Fragaria x ananassa HOM05D000490 ORTHO05D001398 9.3e-15 82.8 56 85.7
FAN05G2540 Fragaria x ananassa HOM05D000490 ORTHO05D001398 9.3e-15 82.8 56 85.7
FAN09G3703 Fragaria x ananassa HOM05D000490 ORTHO05D001398 9.3e-15 82.8 56 85.7
FAN14G3400 Fragaria x ananassa HOM05D000490 ORTHO05D001398 9.3e-15 82.8 56 85.7
FAN05G0001 Fragaria x ananassa HOM05D000490 ORTHO05D001398 3.6e-14 80.9 56 83.9
FAN08G0590 Fragaria x ananassa HOM05D000490 ORTHO05D001398 1.4e-10 68.9 56 73.2
C03p25100 Brassica napus HOM05D000490 ORTHO05D001398 1.2e-09 65.9 56 66.1
FvH4_3g04281 Fragaria vesca HOM05D000490 ORTHO05D001398 4.5e-09 63.9 49 77.6
Sp4g20680 Schrenkiella parvula HOM05D000490 ORTHO05D001398 7.7e-09 63.2 56 58.9
THA.LOC104806053 Tarenaya hassleriana HOM05D000490 ORTHO05D001398 7.7e-09 63.2 56 58.9
Prupe.6G284700 Prunus persica HOM05D000490 ORTHO05D001398 1.7e-08 62.0 53 62.3
Thhalv10017219m.g Eutrema salsugineum HOM05D000490 ORTHO05D001398 2.2e-08 61.6 56 57.1
THA.LOC104823366 Tarenaya hassleriana HOM05D000490 ORTHO05D001398 2.2e-08 61.6 56 58.9
BcaC01g05546 Brassica carinata HOM05D000490 ORTHO05D001398 5.0e-08 60.5 60 61.7
Carub.0004s2033 Capsella rubella HOM05D000490 ORTHO05D001398 6.5e-08 60.1 56 57.1
CARHR132970 Cardamine hirsuta HOM05D000490 ORTHO05D001398 8.5e-08 59.7 56 53.6
Aa31LG8G14050 Aethionema arabicum HOM05D000490 ORTHO05D001398 1.1e-07 59.3 56 55.4
MD04G1166500 Malus domestica HOM05D000490 ORTHO05D001398 1.1e-07 59.3 57 61.4
Cpa.g.sc5.237 Carica papaya HOM05D000490 ORTHO05D001398 1.4e-07 58.9 57 59.6
Manes.13G070100 Manihot esculenta HOM05D000490 ORTHO05D001398 1.9e-07 58.5 56 57.1
BolC3t14901H Brassica oleracea HOM05D000490 ORTHO05D001398 3.2e-07 57.8 60 60.0
AL4G35580 Arabidopsis lyrata HOM05D000490 ORTHO05D001398 4.2e-07 57.4 56 55.4
AT2G38360 Arabidopsis thaliana HOM05D000490 ORTHO05D001398 4.2e-07 57.4 56 55.4
A03p21210 Brassica napus HOM05D000490 ORTHO05D001398 5.5e-07 57.0 60 58.3
BraA03t11358Z Brassica rapa HOM05D000490 ORTHO05D001398 5.5e-07 57.0 60 58.3
Lj2C67T3 Lonicera japonica HOM05D000490 ORTHO05D001398 7.2e-07 56.6 58 56.9
Duzib106G1936 Durio zibethinus HOM05D000490 ORTHO05D001398 1.6e-06 55.5 55 54.5
Duzib093G0116 Durio zibethinus HOM05D000490 ORTHO05D001398 3.6e-06 54.3 56 50.0
Rhsim05G0225600 Rhododendron simsii HOM05D000490 ORTHO05D001398 4.7e-06 53.9 56 57.1
Actinidia11551 Actinidia chinensis HOM05D000490 ORTHO05D001398 6.1e-06 53.5 56 51.8
Lj3P946T25 Lonicera japonica HOM05D000490 ORTHO05D001398 6.1e-06 53.5 56 53.6
PGR004G0404 Punica granatum HOM05D000490 ORTHO05D001398 6.1e-06 53.5 62 53.2
BcaB01g03694 Brassica carinata HOM05D000490 ORTHO05D001398 7.9e-06 53.1 56 55.4
Dinv35408 Davidia involucrata HOM05D000490 ORTHO05D001398 7.9e-06 53.1 58 56.9
Hma1.2p1_0501F.1_g167380 Hydrangea macrophylla HOM05D000490 ORTHO05D001398 7.9e-06 53.1 60 51.7
Thecc.05G006900 Theobroma cacao HOM05D000490 ORTHO05D001398 7.9e-06 53.1 55 52.7


User provided reference genes

Program Settings