Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 7.5e-164 580.5 299 100.0
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.7e-112 407.9 226 95.6
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.3e-111 405.2 226 95.1
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.3e-110 403.7 224 95.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.8e-110 402.5 224 94.6
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 9.0e-93 344.4 222 78.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.0e-93 344.4 229 76.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.2e-92 344.0 234 77.4
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-92 344.0 226 77.4
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.2e-92 344.0 228 77.2
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.5e-92 343.6 226 77.4
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.0e-92 343.2 229 76.0
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.0e-92 343.2 226 77.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.6e-92 342.8 230 77.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 5.9e-92 341.7 229 74.7
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.2e-91 339.7 222 77.5
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.9e-91 339.3 222 77.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.9e-91 339.3 226 76.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.5e-90 336.3 229 74.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.2e-90 335.9 229 74.7
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.2e-89 334.0 220 76.4
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.6e-89 333.6 225 77.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 2.7e-89 332.8 228 75.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 5.1e-88 328.6 226 75.2
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.5e-87 327.0 225 75.1
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.9e-87 326.6 222 73.9
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.3e-87 325.9 224 74.1
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 3.7e-86 322.4 226 73.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.7e-86 322.4 221 74.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 6.3e-86 321.6 223 74.9
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.4e-85 320.5 223 74.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.4e-85 320.5 230 72.6
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-85 320.1 223 74.0
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.9e-85 318.2 230 70.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 9.1e-85 317.8 220 76.4
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.5e-84 317.0 220 73.6
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.5e-84 315.5 225 71.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 4.5e-84 315.5 233 68.2
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.2e-83 313.2 220 72.7
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.2e-83 313.2 235 67.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.8e-83 312.4 227 70.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.8e-83 312.4 242 66.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 6.5e-83 311.6 222 71.6
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.9e-82 310.1 227 70.9
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.5e-82 309.7 228 70.6
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.5e-82 309.7 226 71.2
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 4.2e-82 308.9 223 71.7
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 7.2e-82 308.1 223 71.7
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 9.4e-82 307.8 219 71.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-81 307.4 222 70.7
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.2e-81 307.4 227 67.4
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.1e-81 306.6 221 71.9
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.7e-81 306.2 238 65.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.9e-81 304.7 247 64.8
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.9e-81 304.7 239 64.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.9e-81 304.7 240 65.0
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-80 303.9 219 70.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.0e-80 302.8 210 73.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 3.9e-80 302.4 236 64.8
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 3.9e-80 302.4 219 73.5
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.7e-80 301.6 227 68.7
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 8.8e-80 301.2 222 72.1
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-79 300.8 220 68.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.6e-79 299.7 220 68.2
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.3e-79 299.3 220 70.5
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.3e-79 299.3 227 69.2
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 9.7e-79 297.7 219 69.9
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-78 297.4 226 69.5
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.7e-78 297.0 218 69.7
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.2e-78 296.6 220 67.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.8e-78 296.2 220 67.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.7e-78 295.8 220 68.2
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 3.7e-78 295.8 220 67.3
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 3.7e-78 295.8 227 66.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 4.8e-78 295.4 237 65.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 6.3e-78 295.0 222 68.0
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 8.2e-78 294.7 218 67.9
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-77 293.5 220 65.9
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.8e-77 293.5 220 65.9
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.8e-77 293.5 227 66.5
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.1e-77 292.7 219 66.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.1e-77 292.4 220 67.3
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.3e-77 292.0 219 67.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 9.1e-77 291.2 220 65.9
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.2e-76 290.8 223 68.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.2e-76 290.8 241 63.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.2e-76 290.8 225 67.6
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.5e-76 288.9 227 64.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.0e-75 285.4 227 64.8
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.2e-74 282.7 223 65.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.2e-73 280.8 224 67.0
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 3.6e-73 279.3 225 65.8
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.7e-73 278.9 225 64.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.7e-73 278.9 219 68.0
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.1e-73 278.5 225 64.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 6.1e-73 278.5 233 63.5
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.0e-72 276.2 232 62.5
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.9e-72 275.8 224 62.9
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.7e-72 275.0 225 64.0
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 6.7e-72 275.0 231 62.3
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.0e-71 273.5 261 58.2
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 3.7e-70 269.2 279 54.5
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 8.2e-70 268.1 224 60.7
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 2.4e-69 266.5 252 57.9
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.3e-67 260.8 187 67.4
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.7e-67 260.4 222 61.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.2e-67 260.0 233 60.1
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.1e-66 257.7 214 62.1
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 7.2e-66 255.0 224 58.5
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.4e-64 250.8 222 62.2
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 3.3e-63 246.1 163 76.1
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.7e-62 242.7 217 59.4
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 3.1e-61 239.6 161 77.0
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.7e-60 236.5 175 69.1
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.7e-60 236.5 229 53.3
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.7e-59 233.8 172 69.8
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 8.5e-59 231.5 220 58.2
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-58 231.1 159 75.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 7.2e-58 228.4 226 56.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.3e-56 223.4 154 74.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.8e-56 221.9 244 48.4
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 8.8e-56 221.5 163 68.1
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.5e-55 220.7 241 49.4
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.6e-55 219.9 176 66.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.8e-53 213.8 141 78.7
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 9.1e-53 211.5 222 54.5
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.8e-45 187.2 145 64.8
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 4.5e-44 182.6 204 51.5
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.3e-43 180.3 219 48.9
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.5e-42 176.8 118 75.4
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.5e-42 176.8 223 45.3
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 2.0e-39 167.2 116 72.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.4e-39 166.0 223 43.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 5.8e-39 165.6 187 49.2
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 7.5e-39 165.2 115 71.3
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.9e-38 163.3 193 47.7
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 8.3e-38 161.8 233 45.1
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.9e-37 160.6 191 47.6
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 3.2e-37 159.8 115 71.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.0e-36 155.6 141 61.7
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.3e-34 148.7 145 57.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 9.5e-34 148.3 185 49.2
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.2e-33 145.6 126 64.3
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.4e-31 139.8 224 37.9
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.7e-30 137.5 218 35.8
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.6e-28 131.0 138 52.9
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.0e-27 126.7 90 76.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 5.1e-27 125.9 180 51.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.1e-25 120.6 224 36.6
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.2e-25 119.0 181 41.4
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 4.0e-24 116.3 139 48.9
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 5.2e-24 115.9 91 63.7
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.8e-24 115.5 86 67.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.8e-24 115.5 86 67.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-21 108.2 55 94.5
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.2e-21 105.1 76 69.7
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 3.5e-20 103.2 117 52.1
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.6e-20 102.8 170 39.4
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 7.8e-20 102.1 91 60.4
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.0e-19 101.7 78 66.7
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.3e-18 96.7 94 52.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.8e-17 93.6 103 49.5
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 6.2e-17 92.4 80 62.5
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-16 91.7 75 61.3
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.4e-16 91.3 70 68.6
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-16 90.9 201 33.3
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-16 90.9 201 33.3
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.2e-15 88.2 89 48.3
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.0e-15 87.4 53 79.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.4e-15 86.7 62 71.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-15 86.3 63 71.4
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-15 86.3 63 71.4
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.3e-14 84.7 75 62.7
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-13 81.6 53 77.4
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 2.1e-12 77.4 56 80.4
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 7.8e-12 75.5 72 55.6
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.0e-11 75.1 190 31.1
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.1e-11 72.8 89 44.9
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.6e-09 67.8 53 62.3
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 8.1e-09 65.5 78 48.7
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 3.1e-08 63.5 41 73.2
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 1.2e-07 61.6 48 72.9
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 1.3e-06 58.2 45 71.1


User provided reference genes

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