Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 1.8e-53 212.2 101 100.0
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 1.4e-50 202.6 101 96.0
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 4.3e-39 164.5 84 94.0
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 4.5e-28 127.9 94 66.0
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 3.8e-27 124.8 90 66.7
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 3.8e-27 124.8 94 63.8
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.8e-27 124.8 94 63.8
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.8e-27 124.8 94 63.8
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 8.5e-27 123.6 81 71.6
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 1.9e-26 122.5 81 70.4
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 1.9e-26 122.5 81 70.4
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 3.2e-26 121.7 90 67.8
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 3.2e-26 121.7 90 67.8
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.2e-26 121.7 94 62.8
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 4.2e-26 121.3 85 67.1
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 4.2e-26 121.3 77 72.7
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 5.5e-26 120.9 77 72.7
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 5.5e-26 120.9 77 72.7
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 7.2e-26 120.6 90 66.7
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.2e-26 120.6 88 63.6
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.2e-26 120.6 88 63.6
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 7.2e-26 120.6 88 63.6
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 7.2e-26 120.6 77 72.7
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 7.2e-26 120.6 77 72.7
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 7.2e-26 120.6 77 72.7
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 9.4e-26 120.2 88 68.2
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.2e-25 119.8 90 66.7
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 1.2e-25 119.8 90 66.7
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 72.7
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 2.1e-25 119.0 86 66.3
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.1e-25 119.0 81 67.9
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 2.7e-25 118.6 77 71.4
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 2.7e-25 118.6 77 71.4
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 2.7e-25 118.6 87 64.4
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 2.7e-25 118.6 77 71.4
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 3.6e-25 118.2 90 65.6
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 4.6e-25 117.9 77 70.1
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 4.6e-25 117.9 77 70.1
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 4.6e-25 117.9 88 62.5
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 4.6e-25 117.9 87 64.4
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 6.1e-25 117.5 92 63.0
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 71.4
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 71.4
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 6.1e-25 117.5 85 65.9
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 6.1e-25 117.5 82 67.1
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 6.1e-25 117.5 85 67.1
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 71.4
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 7.9e-25 117.1 78 70.5
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 7.9e-25 117.1 77 71.4
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 7.9e-25 117.1 89 64.0
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 7.9e-25 117.1 89 64.0
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 1.0e-24 116.7 80 68.8
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 1.0e-24 116.7 77 71.4
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 1.4e-24 116.3 80 68.8
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 1.4e-24 116.3 80 71.2
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.8e-24 115.9 85 64.7
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 2.3e-24 115.5 87 64.4
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 2.3e-24 115.5 76 71.1
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 3.0e-24 115.2 78 70.5
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 3.0e-24 115.2 77 70.1
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 3.0e-24 115.2 77 70.1
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 3.0e-24 115.2 77 70.1
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 3.0e-24 115.2 77 68.8
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 3.0e-24 115.2 77 70.1
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 3.9e-24 114.8 77 70.1
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 3.9e-24 114.8 77 70.1
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.9e-24 114.8 77 70.1
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 6.7e-24 114.0 77 71.4
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 6.7e-24 114.0 83 67.5
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 8.8e-24 113.6 84 66.7
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 8.8e-24 113.6 77 68.8
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 8.8e-24 113.6 84 66.7
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 8.8e-24 113.6 84 66.7
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 8.8e-24 113.6 76 71.1
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 8.8e-24 113.6 76 71.1
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 68.8
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 68.8
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 68.8
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 68.8
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 1.1e-23 113.2 82 68.3
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.1e-23 113.2 88 67.0
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.1e-23 113.2 88 67.0
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.1e-23 113.2 76 69.7
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 68.8
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 72.7
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 1.1e-23 113.2 83 67.5
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 1.5e-23 112.8 83 63.9
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 1.5e-23 112.8 77 68.8
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.5e-23 112.8 93 61.3
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 2.0e-23 112.5 92 63.0
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.0e-23 112.5 78 66.7
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.0e-23 112.5 78 66.7
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 4.3e-23 111.3 79 65.8
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 4.3e-23 111.3 92 60.9
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 4.3e-23 111.3 77 67.5
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 4.3e-23 111.3 78 70.5
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 7.4e-23 110.5 77 67.5
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 7.4e-23 110.5 78 67.9
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 7.4e-23 110.5 84 65.5
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 9.7e-23 110.2 75 69.3
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 9.7e-23 110.2 86 65.1
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 9.7e-23 110.2 85 64.7
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 1.3e-22 109.8 86 67.4
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 1.3e-22 109.8 86 67.4
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 1.3e-22 109.8 86 67.4
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 1.3e-22 109.8 86 67.4
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.3e-22 109.8 80 62.5
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.7e-22 109.4 77 70.1
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 1.7e-22 109.4 79 68.4
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 1.7e-22 109.4 71 73.2
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 1.7e-22 109.4 74 70.3
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.7e-22 109.4 75 70.7
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 2.2e-22 109.0 78 64.1
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 2.8e-22 108.6 78 67.9
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 4.8e-22 107.8 75 69.3
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 4.8e-22 107.8 71 71.8
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 6.3e-22 107.5 70 72.9
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 8.2e-22 107.1 71 70.4
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 8.2e-22 107.1 76 67.1
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 2.4e-21 105.5 68 72.1
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 5.3e-21 104.4 71 70.4
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 5.3e-21 104.4 71 70.4
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 5.3e-21 104.4 71 70.4
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 6.9e-21 104.0 70 70.0
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 6.9e-21 104.0 70 70.0
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 9.1e-21 103.6 88 61.4
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 1.2e-20 103.2 88 61.4
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 1.2e-20 103.2 76 67.1
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 1.2e-20 103.2 80 61.2
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.5e-20 102.8 65 73.8
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 1.5e-20 102.8 84 60.7
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.5e-20 102.8 76 64.5
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 2.6e-20 102.1 74 66.2
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 3.4e-20 101.7 87 58.6
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.0e-19 100.1 86 59.3
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 3.8e-19 98.2 84 58.3
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 3.8e-19 98.2 69 66.7
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 3.8e-19 98.2 92 52.2
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 2.5e-18 95.5 77 62.3
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 6.1e-17 90.9 79 55.7
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 7.9e-17 90.5 77 55.8
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 1.0e-16 90.1 75 54.7
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.4e-16 89.7 65 64.6
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.0e-16 88.6 81 55.6
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 3.9e-16 88.2 96 45.8
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 5.1e-16 87.8 65 63.1
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 6.7e-16 87.4 65 63.1
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.5e-15 86.3 93 50.5
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 3.3e-15 85.1 94 52.1
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.2e-14 82.4 71 56.3
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 3.7e-14 81.6 65 58.5
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 3.7e-14 81.6 65 58.5
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 8.2e-14 80.5 71 53.5
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 4.1e-13 78.2 85 44.7
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 9.1e-13 77.0 72 56.9
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 9.1e-13 77.0 93 45.2
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.2e-12 76.6 63 58.7
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 2.0e-12 75.9 64 59.4
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.9e-12 74.3 72 55.6
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.0e-11 73.6 72 55.6
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 2.9e-11 72.0 51 64.7
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.9e-11 72.0 63 54.0
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 2.9e-11 72.0 65 53.8
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 3.2e-10 68.6 47 63.8
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 3.0e-08 62.0 59 47.5
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.1e-07 60.1 80 41.2
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 8.2e-06 53.9 59 49.2


User provided reference genes

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