Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 6.2e-54 213.8 101 100.0
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 3.2e-50 201.4 101 96.0
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 1.5e-39 166.0 84 95.2
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 1.1e-29 133.3 97 69.1
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 1.5e-28 129.4 95 67.4
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.5e-28 129.4 95 67.4
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.5e-28 129.4 95 67.4
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 2.6e-28 128.6 98 64.3
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 2.6e-28 128.6 81 72.8
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.3e-27 126.3 95 66.3
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 1.7e-27 125.9 81 71.6
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.7e-27 125.9 84 69.0
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 2.2e-27 125.6 95 64.2
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 2.9e-27 125.2 77 75.3
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 2.9e-27 125.2 77 75.3
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 2.9e-27 125.2 77 74.0
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 2.9e-27 125.2 81 71.6
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 2.9e-27 125.2 96 62.5
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.9e-27 125.2 84 69.0
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 3.8e-27 124.8 81 70.4
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 3.8e-27 124.8 81 70.4
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 3.8e-27 124.8 77 74.0
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 6.5e-27 124.0 88 69.3
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 6.5e-27 124.0 86 68.6
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 8.5e-27 123.6 77 74.0
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 1.4e-26 122.9 77 72.7
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 1.4e-26 122.9 82 68.3
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 1.4e-26 122.9 77 72.7
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 1.4e-26 122.9 87 66.7
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 1.4e-26 122.9 77 72.7
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 1.9e-26 122.5 90 66.7
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.9e-26 122.5 88 64.8
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.9e-26 122.5 88 64.8
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 1.9e-26 122.5 88 64.8
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.9e-26 122.5 77 72.7
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 2.5e-26 122.1 77 71.4
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 2.5e-26 122.1 77 71.4
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 3.2e-26 121.7 77 72.7
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 3.2e-26 121.7 77 72.7
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 3.2e-26 121.7 77 72.7
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 3.2e-26 121.7 90 66.7
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 3.2e-26 121.7 90 66.7
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 4.2e-26 121.3 77 72.7
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 4.2e-26 121.3 85 67.1
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 5.5e-26 120.9 78 71.8
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 5.5e-26 120.9 92 64.1
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 5.5e-26 120.9 100 60.0
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 5.5e-26 120.9 89 65.2
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 5.5e-26 120.9 89 65.2
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 5.5e-26 120.9 77 72.7
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 5.5e-26 120.9 85 67.1
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 7.2e-26 120.6 85 65.9
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 9.4e-26 120.2 80 72.5
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 1.6e-25 119.4 87 65.5
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 71.4
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 71.4
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 71.4
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 71.4
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.6e-25 119.4 76 72.4
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 71.4
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.6e-25 119.4 85 67.1
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 1.6e-25 119.4 77 70.1
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.6e-25 119.4 85 67.1
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.1e-25 119.0 77 71.4
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.1e-25 119.0 77 71.4
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 2.1e-25 119.0 77 71.4
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 2.1e-25 119.0 78 71.8
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 3.6e-25 118.2 83 66.3
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 3.6e-25 118.2 77 72.7
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 3.6e-25 118.2 103 62.1
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 4.6e-25 117.9 77 70.1
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 4.6e-25 117.9 80 70.0
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 4.6e-25 117.9 80 70.0
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 4.6e-25 117.9 83 68.7
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 6.1e-25 117.5 84 67.9
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 6.1e-25 117.5 84 67.9
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 6.1e-25 117.5 84 67.9
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 70.1
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 70.1
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 70.1
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 70.1
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 6.1e-25 117.5 82 69.5
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 6.1e-25 117.5 77 70.1
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 7.9e-25 117.1 92 64.1
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 7.9e-25 117.1 77 70.1
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 7.9e-25 117.1 76 71.1
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 7.9e-25 117.1 83 68.7
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.0e-24 116.7 93 62.4
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.4e-24 116.3 78 67.9
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.4e-24 116.3 78 67.9
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 2.3e-24 115.5 80 68.8
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 2.3e-24 115.5 77 68.8
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.0e-24 115.2 79 67.1
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.0e-24 115.2 88 67.0
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.0e-24 115.2 88 67.0
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 3.0e-24 115.2 78 71.8
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 3.9e-24 114.8 77 68.8
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 3.9e-24 114.8 103 60.2
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 3.9e-24 114.8 85 65.9
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 5.1e-24 114.4 76 72.4
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 5.1e-24 114.4 76 72.4
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 5.1e-24 114.4 76 72.4
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 5.1e-24 114.4 78 69.2
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 5.1e-24 114.4 83 65.1
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 6.7e-24 114.0 75 70.7
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 8.8e-24 113.6 86 66.3
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 8.8e-24 113.6 74 71.6
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.1e-23 113.2 77 71.4
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 1.1e-23 113.2 79 69.6
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 1.1e-23 113.2 71 74.6
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.1e-23 113.2 75 72.0
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.5e-23 112.8 78 65.4
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 1.5e-23 112.8 78 69.2
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 1.5e-23 112.8 78 65.4
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 1.5e-23 112.8 81 67.9
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 3.3e-23 111.7 70 74.3
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.3e-23 111.7 75 70.7
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 4.3e-23 111.3 76 68.4
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 5.7e-23 110.9 71 71.8
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 1.3e-22 109.8 68 73.5
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 2.8e-22 108.6 88 63.6
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.7e-22 108.2 70 71.4
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.7e-22 108.2 70 71.4
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 3.7e-22 108.2 88 63.6
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 3.7e-22 108.2 71 71.8
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 3.7e-22 108.2 71 71.8
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 3.7e-22 108.2 71 71.8
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 8.2e-22 107.1 65 75.4
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 8.2e-22 107.1 84 61.9
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 8.2e-22 107.1 76 68.4
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.1e-21 106.7 76 65.8
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 1.1e-21 106.7 76 65.8
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 1.4e-21 106.3 74 67.6
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 2.4e-21 105.5 87 59.8
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 9.1e-21 103.6 86 60.5
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 1.5e-20 102.8 84 59.5
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 2.6e-20 102.1 69 68.1
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 5.9e-20 100.9 94 53.2
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 1.9e-18 95.9 77 62.3
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 4.2e-18 94.7 77 57.1
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 4.2e-18 94.7 79 57.0
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 7.2e-18 94.0 65 66.2
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 1.2e-17 93.2 86 51.2
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.6e-17 92.8 81 56.8
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 2.7e-17 92.0 65 64.6
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 3.6e-17 91.7 65 64.6
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.7e-17 91.3 93 52.7
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 1.8e-16 89.4 93 47.3
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.3e-16 89.0 94 53.2
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.5e-15 86.3 71 57.7
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 2.0e-15 85.9 65 60.0
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 2.0e-15 85.9 65 60.0
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 2.8e-14 82.0 85 45.9
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 6.3e-14 80.9 72 58.3
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 8.2e-14 80.5 63 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 1.4e-13 79.7 64 60.9
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 1.4e-13 79.7 86 48.8
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 3.1e-13 78.6 93 46.2
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 4.1e-13 78.2 72 56.9
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 7.0e-13 77.4 72 56.9
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.6e-12 76.3 65 55.4
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 2.0e-12 75.9 51 66.7
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.0e-12 75.9 63 55.6
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 3.2e-10 68.6 47 63.8
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 1.6e-09 66.2 59 49.2
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.4e-08 63.2 78 43.6
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 2.2e-06 55.8 60 45.0
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.8e-06 55.5 74 44.6
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 6.3e-06 54.3 59 49.2


User provided reference genes

Program Settings