Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 2.1e-79 298.9 147 100.0
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 1.5e-24 116.7 85 74.1
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.5e-24 116.7 85 74.1
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.5e-24 116.7 85 74.1
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.5e-24 116.7 85 74.1
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 2.0e-24 116.3 85 72.9
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 4.4e-24 115.2 85 70.6
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.4e-24 115.2 85 70.6
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 4.4e-24 115.2 85 70.6
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 5.7e-24 114.8 85 70.6
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 7.5e-24 114.4 85 69.4
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.7e-23 113.2 85 70.6
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.2e-23 112.8 85 68.2
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.2e-23 112.8 85 68.2
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 2.2e-23 112.8 85 68.2
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 2.2e-23 112.8 85 69.4
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.2e-23 112.8 85 70.6
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 2.2e-23 112.8 85 70.6
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 2.8e-23 112.5 86 68.6
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 2.8e-23 112.5 85 69.4
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 3.7e-23 112.1 85 69.4
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.7e-23 112.1 85 69.4
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 4.8e-23 111.7 85 69.4
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.8e-23 111.7 85 68.2
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.8e-23 111.7 85 69.4
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.8e-23 111.7 85 69.4
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.8e-23 111.7 85 69.4
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 6.3e-23 111.3 85 68.2
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 6.3e-23 111.3 85 68.2
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 6.3e-23 111.3 85 68.2
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 6.3e-23 111.3 85 68.2
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 6.3e-23 111.3 85 68.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 8.3e-23 110.9 85 68.2
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 8.3e-23 110.9 68 82.4
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 8.3e-23 110.9 85 68.2
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 8.3e-23 110.9 85 68.2
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.1e-22 110.5 85 68.2
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 1.4e-22 110.2 85 68.2
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 1.4e-22 110.2 84 69.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.4e-22 110.2 85 69.4
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.4e-22 110.2 85 69.4
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.8e-22 109.8 85 67.1
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 1.8e-22 109.8 85 67.1
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 1.8e-22 109.8 85 68.2
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.8e-22 109.8 85 68.2
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 1.8e-22 109.8 85 67.1
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 68.2
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 68.2
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 68.2
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 68.2
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.4e-22 109.4 84 66.7
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 2.4e-22 109.4 84 67.9
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 68.2
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 2.4e-22 109.4 94 63.8
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 68.2
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 2.4e-22 109.4 85 69.4
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 3.1e-22 109.0 83 69.9
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 3.1e-22 109.0 83 69.9
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 3.1e-22 109.0 85 68.2
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 4.1e-22 108.6 85 68.2
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.1e-22 108.6 85 67.1
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-22 108.6 85 68.2
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-22 108.6 85 68.2
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.4e-22 108.2 85 68.2
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 5.4e-22 108.2 85 68.2
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 5.4e-22 108.2 85 67.1
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 5.4e-22 108.2 85 67.1
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 7.0e-22 107.8 85 67.1
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.1e-22 107.5 85 67.1
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 9.1e-22 107.5 83 68.7
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 9.1e-22 107.5 84 64.3
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.2e-21 107.1 93 61.3
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 67.1
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 65.9
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 67.1
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 67.1
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 67.1
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 67.1
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.2e-21 107.1 85 67.1
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 1.6e-21 106.7 85 67.1
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 1.6e-21 106.7 85 67.1
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 1.6e-21 106.7 85 67.1
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.6e-21 106.7 85 65.9
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.6e-21 106.7 85 65.9
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.0e-21 106.3 85 65.9
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 2.7e-21 105.9 85 67.1
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 2.7e-21 105.9 86 64.0
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 2.7e-21 105.9 83 68.7
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.7e-21 105.9 85 65.9
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 3.5e-21 105.5 85 65.9
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 3.5e-21 105.5 85 64.7
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.5e-21 105.5 85 65.9
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 3.5e-21 105.5 85 65.9
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 4.5e-21 105.1 85 63.5
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.9e-21 104.8 85 65.9
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 5.9e-21 104.8 85 64.7
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 5.9e-21 104.8 83 65.1
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 5.9e-21 104.8 84 64.3
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 7.7e-21 104.4 85 65.9
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 1.0e-20 104.0 85 65.9
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 1.0e-20 104.0 85 65.9
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 1.0e-20 104.0 85 67.1
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 65.9
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 1.3e-20 103.6 85 64.7
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.9e-20 102.4 85 63.5
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 2.9e-20 102.4 85 62.4
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 3.8e-20 102.1 94 58.5
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 3.8e-20 102.1 85 63.5
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 3.8e-20 102.1 85 61.2
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.0e-20 101.7 85 63.5
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 63.5
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 64.7
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 64.7
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 64.7
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 64.7
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 64.7
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 64.7
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 6.6e-20 101.3 85 63.5
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.1e-19 100.5 85 64.7
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.5e-19 100.1 93 57.0
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.5e-19 100.1 85 63.5
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.9e-19 99.8 85 62.4
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 1.9e-19 99.8 85 60.0
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.5e-19 99.4 82 65.9
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 7.2e-19 97.8 85 58.8
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.5e-19 97.4 85 63.5
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 9.5e-19 97.4 85 62.4
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 9.5e-19 97.4 81 64.2
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.2e-18 97.1 85 62.4
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 3.6e-18 95.5 102 54.9
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 8.0e-18 94.4 84 61.9
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 8.0e-18 94.4 85 60.0
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.0e-17 94.0 125 48.0
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.4e-17 93.6 85 60.0
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 1.8e-17 93.2 85 58.8
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.8e-17 93.2 85 60.0
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.0e-17 92.4 46 97.8
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 5.2e-17 91.7 85 58.8
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 8.9e-17 90.9 85 57.6
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 3.4e-16 89.0 79 63.3
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 7.5e-16 87.8 85 56.5
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 9.8e-16 87.4 85 57.6
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 9.8e-16 87.4 45 93.3
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 2.2e-15 86.3 155 41.9
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 2.0e-13 79.7 85 51.8
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 3.5e-13 79.0 85 48.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.5e-11 73.6 42 81.0
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 9.5e-11 70.9 85 41.2
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.5e-08 63.5 61 57.4
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.9e-06 56.6 53 58.5


User provided reference genes

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