Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-36 156.0 77 100.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.9e-15 85.5 45 91.1
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 2.8e-14 81.6 44 90.9
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 3.7e-14 81.3 41 95.1
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 8.2e-14 80.1 44 88.6
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 8.2e-14 80.1 44 88.6
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 8.2e-14 80.1 44 88.6
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.1e-13 79.7 44 88.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-13 79.7 58 69.0
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.4e-13 79.3 44 86.4
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.4e-13 79.3 44 86.4
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.8e-13 79.0 44 86.4
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.8e-13 79.0 44 86.4
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.4e-13 78.6 40 95.0
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 3.1e-13 78.2 40 95.0
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.1e-13 78.2 40 92.5
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 3.1e-13 78.2 43 88.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 3.1e-13 78.2 41 90.2
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 3.1e-13 78.2 44 88.6
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 4.1e-13 77.8 40 92.5
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 4.1e-13 77.8 44 84.1
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 5.3e-13 77.4 41 85.4
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.3e-13 77.4 41 87.8
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 5.3e-13 77.4 44 84.1
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 5.3e-13 77.4 43 88.4
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 5.3e-13 77.4 43 88.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 6.9e-13 77.0 40 90.0
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 9.1e-13 76.6 44 84.1
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 9.1e-13 76.6 52 78.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.2e-12 76.3 41 87.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.2e-12 76.3 42 85.7
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.2e-12 76.3 43 83.7
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.5e-12 75.9 43 88.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.5e-12 75.9 40 90.0
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.0e-12 75.5 43 86.0
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.0e-12 75.5 43 86.0
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.0e-12 75.5 43 86.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.0e-12 75.5 42 90.5
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.0e-12 75.5 43 81.4
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.6e-12 75.1 43 86.0
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.4e-12 74.7 42 85.7
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 3.4e-12 74.7 40 87.5
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 3.4e-12 74.7 44 84.1
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 3.4e-12 74.7 40 90.0
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 3.4e-12 74.7 43 83.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.5e-12 74.3 43 88.4
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 4.5e-12 74.3 43 86.0
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.5e-12 74.3 39 92.3
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 4.5e-12 74.3 55 74.5
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 4.5e-12 74.3 40 90.0
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.9e-12 73.9 43 81.4
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 5.9e-12 73.9 43 88.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 7.7e-12 73.6 41 87.8
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 7.7e-12 73.6 43 86.0
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 7.7e-12 73.6 44 84.1
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.0e-11 73.2 43 86.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.0e-11 73.2 43 83.7
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.0e-11 73.2 42 88.1
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.0e-11 73.2 40 87.5
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.0e-11 73.2 40 85.0
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.3e-11 72.8 43 86.0
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.3e-11 72.8 39 92.3
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.7e-11 72.4 40 85.0
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.2e-11 72.0 42 85.7
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.2e-11 72.0 44 81.8
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.2e-11 72.0 43 83.7
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 2.2e-11 72.0 43 76.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 2.2e-11 72.0 43 79.1
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.9e-11 71.6 43 81.4
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.9e-11 71.6 43 81.4
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.9e-11 71.6 43 81.4
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.8e-11 71.2 43 83.7
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.8e-11 71.2 40 87.5
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 83.7
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 5.0e-11 70.9 40 85.0
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 5.0e-11 70.9 40 85.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 5.0e-11 70.9 43 81.4
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 6.5e-11 70.5 40 87.5
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 8.5e-11 70.1 43 81.4
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 8.5e-11 70.1 43 79.1
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 8.5e-11 70.1 43 81.4
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 8.5e-11 70.1 41 80.5
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 8.5e-11 70.1 43 81.4
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 8.5e-11 70.1 45 75.6
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.5e-11 70.1 43 83.7
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.1e-10 69.7 42 83.3
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-10 69.3 43 81.4
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-10 69.3 43 81.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.4e-10 69.3 43 76.7
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 2.5e-10 68.6 43 83.7
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 2.5e-10 68.6 43 76.7
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 3.2e-10 68.2 52 67.3
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.2e-10 67.8 43 81.4
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 5.5e-10 67.4 43 81.4
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 5.5e-10 67.4 43 81.4
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 5.5e-10 67.4 43 81.4
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 5.5e-10 67.4 40 82.5
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 5.5e-10 67.4 40 82.5
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 7.2e-10 67.0 43 76.7
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 7.2e-10 67.0 43 81.4
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 7.2e-10 67.0 43 81.4
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 9.4e-10 66.6 43 79.1
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 9.4e-10 66.6 43 79.1
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 9.4e-10 66.6 40 85.0
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 9.4e-10 66.6 43 76.7
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 9.4e-10 66.6 43 76.7
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.6e-09 65.9 43 79.1
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.7e-09 65.1 41 78.0
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.7e-09 65.1 43 74.4
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 2.7e-09 65.1 43 74.4
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.6e-09 64.7 40 77.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 6.1e-09 63.9 44 68.2
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.1e-09 63.9 40 80.0
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-08 62.8 43 72.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.8e-08 62.4 51 60.8
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.8e-08 62.4 40 77.5
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.0e-08 61.6 40 77.5
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.0e-08 61.6 40 77.5
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 3.0e-08 61.6 40 77.5
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 3.0e-08 61.6 40 77.5
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.1e-08 60.8 51 58.8
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.1e-08 60.8 51 58.8
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.1e-08 60.8 51 58.8
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 8.8e-08 60.1 41 73.2
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.1e-07 59.7 40 75.0
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-07 59.3 44 63.6
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 2.0e-07 58.9 42 73.8
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.7e-06 55.8 40 67.5
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.8e-06 54.3 28 89.3


User provided reference genes

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