Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0044911 Rosa chinensis HOM05D013659 ORTHO05D012679 1.1e-62 243.0 111 100.0
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 2.2e-28 129.0 99 57.6
FAN19G2126 Fragaria x ananassa HOM05D001715 ORTHO05D012679 9.0e-22 107.1 109 45.9
FvH4_4g07171 Fragaria vesca HOM05D008833 ORTHO05D012679 1.2e-21 106.7 109 45.0
FvH4_1g26014 Fragaria vesca HOM05D000003 ORTHO05D000006 2.9e-20 102.1 109 44.0
FAN06G4530 Fragaria x ananassa HOM05D013659 ORTHO05D012679 2.5e-19 99.0 109 44.0
FAN06G4742 Fragaria x ananassa HOM05D013659 ORTHO05D012679 2.5e-19 99.0 109 44.0
FvH4_3g02851 Fragaria vesca HOM05D013659 ORTHO05D012679 7.1e-19 97.4 105 39.0
FvH4_3g22561 Fragaria vesca HOM05D000003 ORTHO05D000006 2.1e-18 95.9 109 35.8
FAN02G1338 Fragaria x ananassa HOM05D013134 ORTHO05D012679 6.0e-18 94.4 103 41.7
RcHm_v2.0_Chr3g0477221 Rosa chinensis HOM05D013659 ORTHO05D012679 1.0e-17 93.6 97 41.2
FAN12G0535 Fragaria x ananassa HOM05D008833 ORTHO05D000167 1.1e-16 90.1 109 42.2
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 9.7e-16 87.0 82 40.2
RcHm_v2.0_Chr4g0410641 Rosa chinensis HOM05D000003 ORTHO05D000004 6.3e-15 84.3 94 41.5
FvH4_3g30011 Fragaria vesca HOM05D008833 ORTHO05D010662 4.5e-13 78.2 72 44.4
RcHm_v2.0_Chr2g0144601 Rosa chinensis HOM05D013659 ORTHO05D012679 2.5e-11 72.4 85 36.5
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 2.5e-11 72.4 101 33.7
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 1.6e-10 69.7 100 33.0
RcHm_v2.0_Chr1g0346251 Rosa chinensis HOM05D000003 ORTHO05D000004 6.1e-10 67.8 100 29.0
FvH4_4g02431 Fragaria vesca HOM05D028367 ORTHO05D029428 2.3e-09 65.9 75 34.7
FAN22G1455 Fragaria x ananassa HOM05D041124 ORTHO05D012679 2.3e-09 65.9 58 46.6
FAN16G0153 Fragaria x ananassa HOM05D013659 ORTHO05D012679 3.9e-09 65.1 63 46.0
FvH4_6g29902 Fragaria vesca HOM05D013134 ORTHO05D012679 1.5e-08 63.2 103 32.0
FAN04G3151 Fragaria x ananassa HOM05D041124 ORTHO05D035491 3.3e-08 62.0 63 39.7
RcHm_v2.0_Chr5g0007641 Rosa chinensis HOM05D013659 ORTHO05D012679 3.3e-08 62.0 83 36.1
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 9.7e-08 60.5 107 27.1
FvH4_5g32281 Fragaria vesca HOM05D041124 ORTHO05D035491 9.7e-08 60.5 63 38.1
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 1.7e-07 59.7 107 27.1
FvH4_2g12622 Fragaria vesca HOM05D012422 ORTHO05D012874 2.2e-07 59.3 101 31.7
CANSAT64G0029 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-07 58.9 107 29.0
CANSAT64G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-07 58.5 106 29.2
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-07 58.5 104 25.0
RcHm_v2.0_Chr3g0471531 Rosa chinensis HOM05D065238 ORTHO05D012679 4.8e-07 58.2 62 37.1
Manes.17G011401 Manihot esculenta HOM05D000003 ORTHO05D000167 8.2e-07 57.4 102 28.4
RcHm_v2.0_Chr4g0415961 Rosa chinensis HOM05D000003 ORTHO05D000167 8.2e-07 57.4 107 26.2
FvH4_6g21812 Fragaria vesca HOM05D012422 ORTHO05D000167 1.1e-06 57.0 82 31.7
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 1.4e-06 56.6 99 30.3
Manes.10G073737 Manihot esculenta HOM05D000003 ORTHO05D000004 1.8e-06 56.2 103 29.1
FvH4_1g26332 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-06 55.8 62 30.6
FvH4_2g13902 Fragaria vesca HOM05D012422 ORTHO05D012874 2.4e-06 55.8 88 31.8
FvH4_4g09142 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-06 55.8 57 35.1
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-06 55.5 113 24.8
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 3.1e-06 55.5 99 27.3
Prupe.6G203400 Prunus persica HOM05D000003 ORTHO05D000167 4.1e-06 55.1 84 31.0
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 4.1e-06 55.1 90 32.2
FAN12G2709 Fragaria x ananassa HOM05D008833 ORTHO05D019151 5.3e-06 54.7 109 32.1
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 5.3e-06 54.7 101 28.7
CANSAT01G1104 Cannabis sativa HOM05D000003 ORTHO05D000167 6.9e-06 54.3 107 28.0
FAN03G3249 Fragaria x ananassa HOM05D013659 ORTHO05D012679 6.9e-06 54.3 54 44.4
RcHm_v2.0_Chr3g0463661 Rosa chinensis HOM05D009383 ORTHO05D011656 9.1e-06 53.9 100 28.0


User provided reference genes

Program Settings