Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 4.1e-223 777.7 383 100.0
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-204 716.5 386 93.8
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 4.6e-198 694.5 386 89.6
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.6e-179 632.9 397 79.8
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 2.1e-179 632.5 402 79.6
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 5.2e-178 627.9 397 79.3
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 7.1e-167 590.9 404 76.5
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.3e-163 580.1 392 74.0
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.4e-162 575.9 387 74.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 9.0e-162 573.9 396 73.5
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.0e-161 572.8 381 74.8
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.8e-160 568.5 404 73.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.2e-158 563.5 404 70.8
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 2.3e-157 559.3 388 73.2
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.1e-157 558.1 320 84.1
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.3e-156 555.1 403 73.0
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 7.4e-156 554.3 359 76.6
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 9.6e-156 553.9 401 71.8
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.6e-155 553.1 383 73.4
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.8e-155 552.4 407 72.2
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.8e-155 551.6 401 71.3
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 4.8e-155 551.6 320 81.9
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.2e-155 551.2 396 72.2
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 8.1e-155 550.8 390 72.8
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.8e-154 549.7 381 75.3
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 3.1e-154 548.9 404 69.6
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 5.3e-154 548.1 319 83.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 1.5e-153 546.6 399 70.9
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.5e-153 546.6 392 70.9
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.0e-153 546.2 399 70.9
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.0e-153 546.2 388 71.6
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.4e-153 545.4 389 71.7
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 3.4e-153 545.4 407 69.5
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 5.8e-153 544.7 331 80.7
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.7e-152 543.1 396 70.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 8.4e-152 540.8 331 79.8
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.5e-151 538.1 363 73.3
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.6e-150 536.6 399 69.9
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.7e-150 535.8 324 78.1
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 3.5e-150 535.4 314 79.9
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.0e-149 533.9 313 81.8
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 3.9e-149 531.9 315 78.4
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.3e-148 528.9 392 69.4
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 3.3e-148 528.9 396 69.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.3e-147 526.9 380 69.5
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-147 526.6 384 70.1
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.6e-147 526.6 318 80.2
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.0e-145 519.6 353 72.0
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 2.0e-145 519.6 317 78.5
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 3.4e-145 518.8 327 77.7
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.3e-144 516.9 387 70.0
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.8e-144 515.4 300 81.0
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 8.4e-144 514.2 306 78.8
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.2e-143 511.9 310 80.6
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.6e-142 510.0 276 86.2
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.3e-141 506.1 276 85.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.1e-140 503.8 314 77.1
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.5e-140 503.4 405 65.2
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.5e-140 502.7 323 75.5
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 9.7e-140 500.7 324 75.3
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 9.7e-140 500.7 324 75.0
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 9.7e-140 500.7 402 65.2
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.7e-139 498.8 293 81.2
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 4.8e-139 498.4 321 75.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 4.8e-139 498.4 321 75.7
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 8.2e-139 497.7 403 65.5
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.1e-138 497.3 386 65.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.4e-138 496.1 361 67.3
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.1e-138 495.7 402 63.9
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.1e-138 495.4 389 65.6
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.9e-138 494.6 406 64.8
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.6e-137 492.7 387 65.4
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.6e-137 492.7 387 65.4
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.3e-136 490.3 281 80.8
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.9e-136 489.2 410 62.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 6.5e-136 488.0 337 72.1
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-135 486.5 391 65.2
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.2e-135 485.7 332 74.1
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.2e-134 483.8 425 60.9
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.8e-133 479.9 403 62.5
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 3.9e-133 478.8 368 67.4
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 7.4e-132 474.6 371 66.6
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 9.7e-132 474.2 321 71.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 8.2e-131 471.1 326 69.9
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 8.2e-131 471.1 257 86.8
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 6.5e-128 461.5 315 73.3
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.1e-127 460.7 372 64.2
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.9e-127 459.9 326 70.9
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 2.5e-127 459.5 383 62.1
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 8.8e-125 451.1 294 69.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 4.4e-124 448.7 343 68.5
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 2.2e-123 446.4 387 60.5
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.2e-123 446.4 291 69.4
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.7e-123 445.7 306 71.6
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.8e-122 443.4 310 72.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.8e-122 443.4 310 72.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.8e-122 443.4 310 72.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.1e-122 442.6 295 70.2
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.2e-121 440.7 295 71.2
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.9e-119 433.3 262 82.1
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 5.5e-119 431.8 397 60.7
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 5.5e-119 431.8 388 58.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.6e-118 430.3 334 65.9
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.7e-118 428.7 408 60.0
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.8e-117 426.8 245 82.0
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 5.2e-117 425.2 242 82.2
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.5e-116 423.7 292 69.9
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 4.4e-116 422.2 376 56.4
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 7.5e-116 421.4 216 94.9
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.2e-115 419.9 377 56.5
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.3e-115 418.3 378 56.6
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.3e-114 415.2 236 81.8
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 8.5e-112 407.9 398 57.0
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 4.2e-111 405.6 351 61.5
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.7e-110 402.1 378 55.6
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.0e-109 399.4 335 65.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 5.2e-109 398.7 287 69.0
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 8.8e-109 397.9 214 89.3
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.1e-106 389.0 286 67.5
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.3e-101 373.2 294 66.7
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 6.8e-101 371.7 325 57.5
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 8.8e-101 371.3 256 71.9
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 8.8e-101 371.3 283 60.4
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.1e-98 362.8 337 59.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.4e-98 362.1 351 53.0
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 6.1e-94 348.6 220 77.3
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.3e-91 340.9 295 58.0
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 3.7e-91 339.3 306 54.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.2e-89 334.3 226 79.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.9e-87 327.0 209 77.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.4e-85 320.9 347 53.3
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.9e-83 312.4 204 73.0
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-80 304.7 321 54.8
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-80 304.3 173 84.4
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.9e-80 302.8 322 55.3
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 2.8e-78 296.6 160 84.4
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.0e-77 292.7 180 80.0
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-74 284.3 263 60.5
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.0e-73 278.9 158 79.1
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.3e-72 277.7 215 62.8
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.9e-72 276.2 172 82.6
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 7.3e-71 271.9 172 76.7
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 3.4e-68 263.1 188 68.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 7.6e-68 261.9 281 49.5
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 4.9e-67 259.2 174 69.0
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 5.4e-66 255.8 283 45.9
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.1e-65 253.8 154 74.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.0e-64 251.5 135 92.6
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.0e-64 251.5 239 54.0
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.7e-59 234.2 242 57.4
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.4e-58 230.3 148 73.6
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.2e-57 228.0 137 76.6
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.0e-56 223.4 274 43.8
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 5.6e-55 219.2 200 57.5
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.2e-54 215.7 220 54.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.9e-50 204.1 182 56.6
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 3.2e-50 203.4 203 57.1
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 3.2e-50 203.4 274 43.8
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.2e-49 201.4 194 58.2
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 2.1e-49 200.7 388 37.4
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 3.3e-47 193.4 174 54.6
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-46 191.0 219 47.5
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 4.3e-39 166.4 119 66.4
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 4.2e-34 149.8 179 50.3
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.6e-30 137.9 81 76.5
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 5.9e-28 129.4 82 75.6
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 8.5e-27 125.6 139 45.3
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.1e-25 120.9 70 81.4
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 6.7e-24 115.9 102 54.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 2.2e-19 100.9 164 41.5
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 3.8e-19 100.1 53 84.9
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 5.5e-18 96.3 146 41.8
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.7e-15 86.3 55 70.9
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-14 84.7 77 59.7
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 4.8e-14 83.2 56 67.9
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.1e-13 82.0 65 56.9
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-13 82.0 44 90.9
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.1e-13 80.1 45 80.0
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.9e-12 76.3 63 57.1
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 7.7e-12 75.9 55 63.6
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 3.8e-11 73.6 48 72.9
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 5.0e-11 73.2 50 64.0
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 8.5e-11 72.4 252 29.4
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 2.5e-10 70.9 252 29.4
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 4.2e-10 70.1 261 30.3
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.4e-07 59.3 41 73.2


User provided reference genes

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