Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 3.5e-50 201.4 111 100.0
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 2.9e-44 181.8 100 99.0
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 2.9e-44 181.8 100 99.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 4.2e-43 177.9 100 95.0
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 5.4e-43 177.6 100 96.0
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.6e-42 176.0 100 96.0
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.6e-42 176.0 100 96.0
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.6e-42 176.0 100 96.0
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.6e-42 176.0 100 96.0
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 2.1e-42 175.6 100 97.0
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 2.7e-42 175.3 100 97.0
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 3.5e-42 174.9 100 95.0
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 4.6e-42 174.5 102 93.1
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 4.6e-42 174.5 102 93.1
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 4.6e-42 174.5 102 93.1
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 4.6e-42 174.5 100 96.0
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 6.0e-42 174.1 101 95.0
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.0e-42 174.1 101 95.0
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.0e-42 174.1 101 95.0
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 7.8e-42 173.7 101 94.1
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 7.8e-42 173.7 101 94.1
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 7.8e-42 173.7 100 93.0
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 7.8e-42 173.7 101 94.1
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-41 172.9 100 94.0
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-41 172.9 100 94.0
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-41 172.9 100 94.0
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-41 172.9 100 94.0
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-41 172.9 100 94.0
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-41 172.9 100 94.0
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.1e-40 169.9 100 93.0
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-40 169.9 100 94.0
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-40 169.9 100 94.0
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-40 169.9 100 94.0
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 1.5e-40 169.5 100 92.0
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-40 169.1 100 92.0
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.9e-40 169.1 100 94.0
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 2.8e-39 165.2 100 94.0
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 3.6e-39 164.9 100 90.0
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 6.2e-39 164.1 101 90.1
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.1e-38 163.3 100 89.0
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 2.4e-38 162.2 100 89.0
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 1.2e-37 159.8 100 88.0
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-37 159.8 100 90.0
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-37 159.8 100 87.0
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 2.0e-37 159.1 100 87.0
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 3.4e-37 158.3 93 90.3
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 3.4e-37 158.3 93 90.3
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 5.8e-37 157.5 92 92.4
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 5.8e-37 157.5 92 92.4
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-37 156.8 100 86.0
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 4.9e-36 154.5 100 85.0
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.9e-35 152.5 100 84.0
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 4.2e-35 151.4 98 81.6
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 1.8e-33 146.0 100 80.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.3e-32 141.7 95 83.2
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.8e-31 137.9 91 85.7
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 6.2e-31 137.5 100 82.0
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 6.2e-31 137.5 100 82.0
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 5.3e-30 134.4 82 87.8
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 6.9e-30 134.0 95 78.9
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 1.4e-27 126.3 99 77.8
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 1.5e-24 116.3 100 71.0
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-24 115.9 66 90.9
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 3.3e-24 115.2 99 71.7
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 9.6e-24 113.6 66 89.4
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-23 112.5 66 87.9
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-23 111.3 62 91.9
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.4e-22 109.8 104 66.3
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 6.9e-22 107.5 67 82.1
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.2e-21 106.7 75 82.7
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 1.2e-21 106.7 65 84.6
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 3.4e-21 105.1 74 81.1
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 2.9e-20 102.1 67 82.1
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 3.8e-20 101.7 77 75.3
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 6.5e-20 100.9 74 78.4
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 2.5e-19 99.0 59 84.7
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 2.7e-18 95.5 54 88.9
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-18 95.1 59 88.1
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 3.5e-18 95.1 60 86.7
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 6.0e-18 94.4 96 64.6
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 6.0e-18 94.4 55 89.1
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 1.0e-17 93.6 76 73.7
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 1.8e-17 92.8 77 72.7
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.1e-16 90.1 76 63.2
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 2.5e-16 89.0 52 88.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 2.5e-16 89.0 52 88.5
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 9.7e-16 87.0 51 88.2
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 6.3e-15 84.3 53 86.8
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 1.1e-14 83.6 51 86.3
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 6.9e-14 80.9 100 56.0
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 9.0e-14 80.5 49 91.8
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 2.9e-12 75.5 97 50.5
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 8.5e-12 73.9 51 76.5
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 9.4e-11 70.5 41 85.4
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 7.4e-08 60.8 41 78.0
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 3.1e-06 55.5 43 60.5
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 5.3e-06 54.7 32 78.1


User provided reference genes

Program Settings