Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0042871 Rosa chinensis HOM05D000053 ORTHO05D000035 5.5e-53 210.7 106 100.0
RcHm_v2.0_Chr5g0043081 Rosa chinensis HOM05D000053 ORTHO05D000035 4.1e-40 167.9 102 83.3
RcHm_v2.0_Chr5g0042831 Rosa chinensis HOM05D000053 ORTHO05D000035 2.7e-39 165.2 102 82.4
RcHm_v2.0_Chr5g0043131 Rosa chinensis HOM05D000053 ORTHO05D000035 3.2e-32 141.7 102 75.5
Prupe.4G234200 Prunus persica HOM05D000053 ORTHO05D000035 6.6e-14 80.9 98 48.0
Prupe.4G233100 Prunus persica HOM05D000053 ORTHO05D000035 5.8e-10 67.8 99 44.4
Prupe.4G233200 Prunus persica HOM05D000053 ORTHO05D000035 6.4e-09 64.3 80 43.8
Gohir.A01G054800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.1e-08 63.5 96 40.6
Hma1.2p1_1532F.1_g289310 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 1.4e-08 63.2 85 38.8
Thecc.07G158900 Theobroma cacao HOM05D000053 ORTHO05D000035 1.9e-08 62.8 99 39.4
Ciclev10023810m.g Citrus clementina HOM05D000053 ORTHO05D000035 3.2e-08 62.0 94 40.4
Thecc.07G158000 Theobroma cacao HOM05D000053 ORTHO05D000035 3.2e-08 62.0 100 39.0
COL.COLO4_09792 Corchorus olitorius HOM05D000053 ORTHO05D000035 4.1e-08 61.6 90 37.8
Hma1.2p1_2053F.1_g312710 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 4.1e-08 61.6 93 37.6
Gohir.A04G042200 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.4e-08 61.2 89 43.8
Potri.012G020895 Populus trichocarpa HOM05D000053 ORTHO05D000035 5.4e-08 61.2 85 44.7
arahy.Tifrunner.gnm1.ann1.HM3IZV Arachis hypogaea HOM05D000053 ORTHO05D000035 7.1e-08 60.8 91 44.0
COL.COLO4_17410 Corchorus olitorius HOM05D000053 ORTHO05D000035 7.1e-08 60.8 92 41.3
Duzib268G0774 Durio zibethinus HOM05D000053 ORTHO05D000035 9.2e-08 60.5 90 44.4
Duzib268G1259 Durio zibethinus HOM05D000053 ORTHO05D000035 9.2e-08 60.5 97 42.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.2e-07 60.1 71 42.3
Thecc.05G198500 Theobroma cacao HOM05D000053 ORTHO05D000035 1.2e-07 60.1 101 38.6
arahy.Tifrunner.gnm1.ann1.RES0SR Arachis hypogaea HOM05D000053 ORTHO05D000035 1.6e-07 59.7 91 42.9
Duzib268G1127 Durio zibethinus HOM05D000053 ORTHO05D000035 2.1e-07 59.3 101 42.6
Prupe.4G279000 Prunus persica HOM05D000053 ORTHO05D000035 2.1e-07 59.3 65 46.2
Potri.012G009900 Populus trichocarpa HOM05D000053 ORTHO05D000035 2.7e-07 58.9 82 42.7
Carub.0003s2899 Capsella rubella HOM05D000053 ORTHO05D000035 3.5e-07 58.5 85 37.6
Duzib213G0190 Durio zibethinus HOM05D000053 ORTHO05D000035 3.5e-07 58.5 91 38.5
TAR427G0004 Trochodendron aralioides HOM05D000053 ORTHO05D000035 4.6e-07 58.2 77 45.5
BcaB08g34570 Brassica carinata HOM05D000053 ORTHO05D000035 6.0e-07 57.8 71 40.8
BraA04t17589Z Brassica rapa HOM05D000053 ORTHO05D000035 6.0e-07 57.8 89 34.8
Duzib151G0957 Durio zibethinus HOM05D000053 ORTHO05D000035 6.0e-07 57.8 92 35.9
Gorai.002G060600 Gossypium raimondii HOM05D000053 ORTHO05D000035 6.0e-07 57.8 96 37.5
TAR624G0734 Trochodendron aralioides HOM05D000053 ORTHO05D000035 6.0e-07 57.8 77 44.2
BolC1t05336H Brassica oleracea HOM05D000053 ORTHO05D000035 7.8e-07 57.4 86 34.9
COL.COLO4_17520 Corchorus olitorius HOM05D000053 ORTHO05D000035 7.8e-07 57.4 97 40.2
Gorai.009G354600 Gossypium raimondii HOM05D000053 ORTHO05D000035 7.8e-07 57.4 91 37.4
Medtr5g087070 Medicago truncatula HOM05D000053 ORTHO05D000035 7.8e-07 57.4 63 47.6
Thecc.07G111300 Theobroma cacao HOM05D000053 ORTHO05D000035 7.8e-07 57.4 95 42.1
Duzib213G0467 Durio zibethinus HOM05D000053 ORTHO05D000035 1.0e-06 57.0 97 40.2
Duzib268G1626 Durio zibethinus HOM05D000053 ORTHO05D000035 1.0e-06 57.0 94 36.2
Sopen01g001870 Solanum pennellii HOM05D000053 ORTHO05D000035 1.0e-06 57.0 85 37.6
Ciclev10023797m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.3e-06 56.6 104 37.5
Gohir.D05G341100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.3e-06 56.6 87 39.1
Gorai.009G367700 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.3e-06 56.6 87 39.1
Thecc.10G166900 Theobroma cacao HOM05D000053 ORTHO05D000035 1.3e-06 56.6 97 39.2
A04p20070 Brassica napus HOM05D000053 ORTHO05D000035 1.7e-06 56.2 89 33.7
BraA01t04201Z Brassica rapa HOM05D000053 ORTHO05D000035 1.7e-06 56.2 86 34.9
Glyma.16G169300 Glycine max HOM05D000053 ORTHO05D000035 1.7e-06 56.2 64 43.8
Gohir.D01G042744 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.7e-06 56.2 96 37.5
Gohir.D13G154000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.7e-06 56.2 82 36.6
Medtr5g087090 Medicago truncatula HOM05D000053 ORTHO05D000035 1.7e-06 56.2 63 47.6
AL3G46870 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 2.3e-06 55.8 63 39.7
BcaC01g03567 Brassica carinata HOM05D000053 ORTHO05D000035 2.3e-06 55.8 90 35.6
Potri.012G020600 Populus trichocarpa HOM05D000053 ORTHO05D000035 2.3e-06 55.8 88 39.8
Solyc01g005870.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 3.0e-06 55.5 84 38.1
Thecc.07G019400 Theobroma cacao HOM05D000053 ORTHO05D000035 3.0e-06 55.5 90 37.8
Thecc.07G115400 Theobroma cacao HOM05D000053 ORTHO05D000035 3.0e-06 55.5 91 37.4
TAR427G0003 Trochodendron aralioides HOM05D000053 ORTHO05D000035 3.0e-06 55.5 78 44.9
AL3G22620 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 3.9e-06 55.1 62 40.3
BcaB04g21147 Brassica carinata HOM05D000053 ORTHO05D000035 3.9e-06 55.1 86 34.9
CARHR085660 Cardamine hirsuta HOM05D000053 ORTHO05D000035 3.9e-06 55.1 62 40.3
Ciclev10024087m.g Citrus clementina HOM05D000053 ORTHO05D000035 3.9e-06 55.1 77 39.0
Potri.012G005600 Populus trichocarpa HOM05D000053 ORTHO05D000035 3.9e-06 55.1 85 41.2
BcaC01g03088 Brassica carinata HOM05D000053 ORTHO05D000035 5.1e-06 54.7 63 38.1
A03p45280 Brassica napus HOM05D000053 ORTHO05D000035 5.1e-06 54.7 87 33.3
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 5.1e-06 54.7 63 38.1
BolC3t17903H Brassica oleracea HOM05D000053 ORTHO05D000035 5.1e-06 54.7 63 38.1
BraA03t13661Z Brassica rapa HOM05D000053 ORTHO05D000035 5.1e-06 54.7 87 33.3
CANSAT11G1112 Cannabis sativa HOM05D000053 ORTHO05D000035 5.1e-06 54.7 96 40.6
CANSAT11G2312 Cannabis sativa HOM05D000053 ORTHO05D000035 5.1e-06 54.7 79 45.6
COL.COLO4_38379 Corchorus olitorius HOM05D000053 ORTHO05D000035 5.1e-06 54.7 86 34.9
Gohir.A04G042160 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.1e-06 54.7 87 39.1
Hma1.2p1_2053F.1_g312690 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 5.1e-06 54.7 90 37.8
Potri.012G010101 Populus trichocarpa HOM05D000053 ORTHO05D000035 5.1e-06 54.7 91 41.8
SpUn0310_0005 Schrenkiella parvula HOM05D000053 ORTHO05D000035 5.1e-06 54.7 87 33.3
arahy.Tifrunner.gnm1.ann1.PPH0ND Arachis hypogaea HOM05D000053 ORTHO05D000035 6.6e-06 54.3 100 39.0
COL.COLO4_13323 Corchorus olitorius HOM05D000053 ORTHO05D000035 6.6e-06 54.3 60 45.0
Duzib213G0164 Durio zibethinus HOM05D000053 ORTHO05D000035 6.6e-06 54.3 105 41.0
Gohir.A01G095100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.6e-06 54.3 66 39.4
Gohir.A04G042100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.6e-06 54.3 92 39.1
Gorai.009G367800 Gossypium raimondii HOM05D000053 ORTHO05D000035 6.6e-06 54.3 88 40.9
Medtr5g086570 Medicago truncatula HOM05D000053 ORTHO05D000035 6.6e-06 54.3 62 43.5
Medtr5g086810 Medicago truncatula HOM05D000053 ORTHO05D000035 6.6e-06 54.3 61 45.9
Potri.011G104600 Populus trichocarpa HOM05D000053 ORTHO05D000035 6.6e-06 54.3 93 39.8
Potri.012G027250 Populus trichocarpa HOM05D000053 ORTHO05D000035 6.6e-06 54.3 96 39.6
Thecc.07G018800 Theobroma cacao HOM05D000053 ORTHO05D000035 6.6e-06 54.3 87 42.5
Thecc.07G125000 Theobroma cacao HOM05D000053 ORTHO05D000035 6.6e-06 54.3 96 37.5
Carub.0003s2902 Capsella rubella HOM05D000053 ORTHO05D000035 8.6e-06 53.9 83 36.1
FAN01G1263 Fragaria x ananassa HOM05D000053 ORTHO05D000035 8.6e-06 53.9 77 44.2
Gohir.D01G042748 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.6e-06 53.9 96 36.5
Hma1.2p1_1532F.1_g289340 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 8.6e-06 53.9 98 36.7
LjContig00081g0000300 Lotus japonicus HOM05D000053 ORTHO05D000035 8.6e-06 53.9 86 38.4
Manes.10G026700 Manihot esculenta HOM05D000053 ORTHO05D000035 8.6e-06 53.9 96 37.5
Psat0s2558g0040 Pisum sativum HOM05D000053 ORTHO05D000035 8.6e-06 53.9 87 43.7
Potri.011G055000 Populus trichocarpa HOM05D000053 ORTHO05D000035 8.6e-06 53.9 66 42.4
Potri.012G008300 Populus trichocarpa HOM05D000053 ORTHO05D000035 8.6e-06 53.9 66 42.4
Potri.012G027600 Populus trichocarpa HOM05D000053 ORTHO05D000035 8.6e-06 53.9 85 38.8
Potri.012G030125 Populus trichocarpa HOM05D000053 ORTHO05D000035 8.6e-06 53.9 66 42.4
QL12p004057 Quercus lobata HOM05D000053 ORTHO05D000035 8.6e-06 53.9 88 39.8
Sopen01g001720 Solanum pennellii HOM05D000053 ORTHO05D000035 8.6e-06 53.9 85 37.6
Thecc.07G019100 Theobroma cacao HOM05D000053 ORTHO05D000035 8.6e-06 53.9 93 33.3


User provided reference genes

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