Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0042801 Rosa chinensis HOM05D000751 ORTHO05D012430 4.4e-71 271.2 135 100.0
RcHm_v2.0_Chr5g0071001 Rosa chinensis HOM05D000751 ORTHO05D012430 3.5e-60 235.0 124 94.4
RcHm_v2.0_Chr3g0460811 Rosa chinensis HOM05D000751 ORTHO05D000889 2.4e-37 159.1 147 61.9
CiPaw.09G219700 Carya illinoinensis HOM05D000751 ORTHO05D000889 4.2e-29 131.7 147 51.0
FAN02G3208 Fragaria x ananassa HOM05D000751 ORTHO05D000889 4.2e-29 131.7 158 53.2
FAN14G5618 Fragaria x ananassa HOM05D000751 ORTHO05D000889 9.3e-29 130.6 155 53.5
FvH4_6g10110 Fragaria vesca HOM05D000751 ORTHO05D000889 1.2e-28 130.2 155 53.5
Cfa017054 Carpinus fangiana HOM05D000751 ORTHO05D000889 1.6e-28 129.8 147 52.4
FAN05G0807 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.6e-28 129.8 154 53.9
FAN09G1566 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.6e-28 129.8 158 52.5
CiPaw.10G164500 Carya illinoinensis HOM05D000751 ORTHO05D000889 2.7e-28 129.0 148 50.7
Ciclev10011044m.g Citrus clementina HOM05D000751 ORTHO05D000889 6.0e-28 127.9 147 51.7
FAN05G3756 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.0e-27 127.1 154 53.2
Gohir.D02G004400 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.0e-27 125.6 147 51.0
Gohir.A02G004000 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.5e-26 122.5 147 50.3
Gorai.005G005000 Gossypium raimondii HOM05D000751 ORTHO05D000889 2.5e-26 122.5 147 50.3
MD12G1186100 Malus domestica HOM05D000751 ORTHO05D000889 5.6e-26 121.3 164 46.3
COL.COLO4_16549 Corchorus olitorius HOM05D000751 ORTHO05D012430 2.1e-25 119.4 154 47.4
Gohir.D02G004500 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.8e-25 118.2 147 49.0
Gorai.005G005100 Gossypium raimondii HOM05D000751 ORTHO05D000889 4.8e-25 118.2 147 49.0
Manes.08G174000 Manihot esculenta HOM05D000751 ORTHO05D000889 4.8e-25 118.2 147 49.7
Thecc.04G153800 Theobroma cacao HOM05D000751 ORTHO05D000889 6.2e-25 117.9 147 47.6
MD04G1172800 Malus domestica HOM05D000751 ORTHO05D000889 3.1e-24 115.5 164 46.3
Gohir.A02G004100 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.0e-24 115.2 147 48.3
Duzib212G0506 Durio zibethinus HOM05D000751 ORTHO05D000889 5.3e-24 114.8 147 49.0
CANSAT35G1451 Cannabis sativa HOM05D000751 ORTHO05D000889 6.9e-24 114.4 159 44.7
CsaV3_4G027110 Cucumis sativus L. HOM05D000751 ORTHO05D000889 9.0e-24 114.0 149 47.0
ClCG04G006390 Citrullus lanatus HOM05D000751 ORTHO05D000889 2.6e-23 112.5 147 46.3
TWI77G0574 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 5.8e-23 111.3 147 42.9
MELO3C025212.2 Cucumis melo HOM05D000751 ORTHO05D000889 7.6e-23 110.9 149 46.3
Duzib151G0240 Durio zibethinus HOM05D000751 ORTHO05D000889 1.3e-22 110.2 147 46.3
TWI74G1085 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 3.8e-22 108.6 147 43.5
Prupe.6G291600 Prunus persica HOM05D000751 ORTHO05D000889 6.4e-22 107.8 158 45.6
Sed0006675 Sechium edule HOM05D000751 ORTHO05D000889 6.4e-22 107.8 147 44.2
QL07p032538 Quercus lobata HOM05D000751 ORTHO05D000889 1.8e-19 99.8 148 43.9
Atru.chr8.2384 Acer truncatum HOM05D000751 ORTHO05D000889 3.0e-19 99.0 147 43.5
Duzib268G1287 Durio zibethinus HOM05D000751 ORTHO05D000889 3.9e-19 98.6 147 43.5
TWI53G1535 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 5.6e-18 94.7 147 40.1
Manes.09G116700 Manihot esculenta HOM05D000751 ORTHO05D000889 2.1e-17 92.8 154 42.2
Peaxi162Scf00732g00435 Petunia axillaris HOM05D000751 ORTHO05D000889 2.1e-17 92.8 147 40.1
Dinv25326 Davidia involucrata HOM05D000751 ORTHO05D000889 3.6e-17 92.0 147 40.8
Cpa.g.sc86.43 Carica papaya HOM05D000751 ORTHO05D012430 8.1e-17 90.9 76 63.2
Hma1.2p1_1052F.1_g252300 Hydrangea macrophylla HOM05D000751 ORTHO05D000889 8.1e-17 90.9 147 42.2
AUR62006371 Chenopodium quinoa HOM05D000751 ORTHO05D000889 1.1e-16 90.5 147 41.5
Ah.08g209610 Amaranthus hybridus HOM05D000751 ORTHO05D000889 1.8e-16 89.7 147 44.2
AUR62029704 Chenopodium quinoa HOM05D000751 ORTHO05D000889 1.8e-16 89.7 147 41.5
Dinv11375 Davidia involucrata HOM05D000751 ORTHO05D000889 2.4e-16 89.4 147 44.2
THA.LOC104806642 Tarenaya hassleriana HOM05D000751 ORTHO05D000889 9.0e-16 87.4 151 39.7
TAR369G0772 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.2e-15 87.0 147 40.8
MBI15_g40104_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.5e-15 86.7 145 40.0
Actinidia20786 Actinidia chinensis HOM05D000751 ORTHO05D000889 2.6e-15 85.9 147 42.9
EL10Ac7g17072 Beta vulgaris HOM05D000751 ORTHO05D000889 3.4e-15 85.5 147 41.5
Nitab4.5_0003003g0020 Nicotiana tabacum HOM05D000751 ORTHO05D000889 4.5e-15 85.1 154 39.0
Hund03727 Selenicereus undatus HOM05D000751 ORTHO05D000889 7.6e-15 84.3 147 40.8
TAR633G1193 Trochodendron aralioides HOM05D000751 ORTHO05D000889 6.4e-14 81.3 151 39.1
GSVIVG01030201001 Vitis vinifera HOM05D000751 ORTHO05D000889 6.4e-14 81.3 149 37.6
BcaC09g50101 Brassica carinata HOM05D000751 ORTHO05D000889 9.3e-13 77.4 145 37.9
C01p28950 Brassica napus HOM05D000751 ORTHO05D000889 9.3e-13 77.4 145 37.9
BolC1t02826H Brassica oleracea HOM05D000751 ORTHO05D000889 9.3e-13 77.4 145 37.9
BraA01t02240Z Brassica rapa HOM05D000751 ORTHO05D000889 9.3e-13 77.4 145 37.9
TAR623G0489 Trochodendron aralioides HOM05D000751 ORTHO05D000889 9.3e-13 77.4 149 38.3
A01p23310 Brassica napus HOM05D000751 ORTHO05D000889 1.6e-12 76.6 145 37.2
Sp5g10650 Schrenkiella parvula HOM05D000751 ORTHO05D000889 3.5e-12 75.5 136 39.7
Eucgr.A00717 Eucalyptus grandis HOM05D000751 ORTHO05D000889 4.6e-12 75.1 148 36.5
Aa31sc296G60 Aethionema arabicum HOM05D000751 ORTHO05D000889 6.0e-12 74.7 147 38.1
Nn5g26870 Nelumbo nucifera HOM05D000751 ORTHO05D000889 7.9e-12 74.3 147 34.7
Cc06_g00480 Coffea canephora HOM05D000751 ORTHO05D000889 1.0e-11 73.9 128 36.7
PGR031G2288 Punica granatum HOM05D000751 ORTHO05D000889 1.0e-11 73.9 147 36.1
Sc02g0000860 Simmondsia chinensis HOM05D000751 ORTHO05D000889 1.0e-11 73.9 147 39.5
Actinidia11516 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.3e-11 73.6 147 37.4
AL5G32060 Arabidopsis lyrata HOM05D000751 ORTHO05D000889 8.7e-11 70.9 132 36.4
CARHR161210 Cardamine hirsuta HOM05D000751 ORTHO05D000889 8.7e-11 70.9 108 39.8
Aqoxy2G00716 Aquilegia oxysepala HOM05D000751 ORTHO05D000889 1.1e-10 70.5 151 39.1
AT3G51620 Arabidopsis thaliana HOM05D000751 ORTHO05D000889 1.5e-10 70.1 132 37.1
Carub.0005s1798 Capsella rubella HOM05D000751 ORTHO05D000889 1.5e-10 70.1 147 36.1
BcaNung00374 Brassica carinata HOM05D000751 ORTHO05D000889 1.9e-10 69.7 107 38.3
Thhalv10010169m.g Eutrema salsugineum HOM05D000751 ORTHO05D000889 1.9e-10 69.7 147 38.1
SalBow5G1146 Salvia bowleyana HOM05D000751 ORTHO05D000889 1.9e-10 69.7 135 33.3
SalBow5G0723 Salvia bowleyana HOM05D000751 ORTHO05D000889 2.5e-10 69.3 135 33.3
MSTRG.18949 Avicennia marina HOM05D000751 ORTHO05D000889 4.3e-10 68.6 147 36.1
CDE12G0085 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 5.6e-10 68.2 110 40.0
GSVIVG01024577001 Vitis vinifera HOM05D000751 ORTHO05D000889 7.4e-10 67.8 147 34.0
Haze_15642 Corylus avellana HOM05D000751 ORTHO05D000889 9.6e-10 67.4 149 33.6
CAN.G5.22 Capsicum annuum HOM05D000751 ORTHO05D000889 1.6e-09 66.6 119 35.3
Sc07g0005870 Simmondsia chinensis HOM05D000751 ORTHO05D000889 3.7e-09 65.5 106 38.7
ATR0681G301 Amborella trichopoda HOM05D000751 ORTHO05D000889 6.2e-09 64.7 146 32.9
Migut.J00055 Erythranthe guttata HOM05D000751 ORTHO05D000889 1.8e-08 63.2 115 37.4
HPP92_019057 Vanilla planifolia HOM05D000751 ORTHO05D000889 2.4e-08 62.8 147 29.9
Cfa003812 Carpinus fangiana HOM05D000751 ORTHO05D000889 3.1e-08 62.4 148 33.1
CSS0039519 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D012430 6.9e-08 61.2 87 44.8
CANSAT56G1511 Cannabis sativa HOM05D000751 ORTHO05D000889 6.9e-08 61.2 148 32.4
MD01G1079200 Malus domestica HOM05D000751 ORTHO05D000889 9.0e-08 60.8 148 32.4
PSO384G3107 Papaver somniferum HOM05D000751 ORTHO05D000889 9.0e-08 60.8 154 31.2
EL10Ac1g00291 Beta vulgaris HOM05D000751 ORTHO05D000889 1.2e-07 60.5 114 36.8
Oeu024001.1 Olea europaea HOM05D000751 ORTHO05D000889 1.2e-07 60.5 142 31.7
PSO339G3673 Papaver somniferum HOM05D000751 ORTHO05D000889 1.2e-07 60.5 154 30.5
RcHm_v2.0_Chr1g0359271 Rosa chinensis HOM05D000751 ORTHO05D000889 1.2e-07 60.5 148 32.4
AUR62004473 Chenopodium quinoa HOM05D000751 ORTHO05D000889 2.0e-07 59.7 149 32.2
AUR62023477 Chenopodium quinoa HOM05D000751 ORTHO05D000889 2.0e-07 59.7 149 32.2
QL01p025054 Quercus lobata HOM05D000751 ORTHO05D000889 2.0e-07 59.7 152 31.6
HPP92_020417 Vanilla planifolia HOM05D000751 ORTHO05D000889 2.0e-07 59.7 119 36.1
Ah.15g090130 Amaranthus hybridus HOM05D000751 ORTHO05D012430 2.6e-07 59.3 84 45.2
Lalb_Chr04g0254471 Lupinus albus HOM05D000751 ORTHO05D000889 2.6e-07 59.3 148 31.1
CSS0006115 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 3.4e-07 58.9 149 32.2
Cc02_g39220 Coffea canephora HOM05D000751 ORTHO05D000889 3.4e-07 58.9 148 33.1
Dinv28724 Davidia involucrata HOM05D000751 ORTHO05D000889 3.4e-07 58.9 148 32.4
Glyma.07G056700 Glycine max HOM05D000751 ORTHO05D000889 3.4e-07 58.9 148 30.4
Glyma.16G025800 Glycine max HOM05D000751 ORTHO05D000889 3.4e-07 58.9 148 30.4
Prupe.2G186200 Prunus persica HOM05D000751 ORTHO05D000889 3.4e-07 58.9 148 31.8
MD07G1148100 Malus domestica HOM05D000751 ORTHO05D000889 4.5e-07 58.5 148 32.4
Phvul.010G112700 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 4.5e-07 58.5 148 30.4
VMungo0331G1997 Vigna mungo HOM05D000751 ORTHO05D000889 4.5e-07 58.5 148 30.4
C07p46430 Brassica napus HOM05D000751 ORTHO05D000889 5.8e-07 58.2 110 37.3
BolC7t45160H Brassica oleracea HOM05D000751 ORTHO05D000889 5.8e-07 58.2 110 37.3
ClCG09G009590 Citrullus lanatus HOM05D000751 ORTHO05D000889 5.8e-07 58.2 148 31.1
MELO3C023722.2 Cucumis melo HOM05D000751 ORTHO05D000889 5.8e-07 58.2 148 31.1
CsaV3_7G025210 Cucumis sativus L. HOM05D000751 ORTHO05D000889 5.8e-07 58.2 148 31.1
HanXRQChr16g0509471 Helianthus annuus HOM05D000751 ORTHO05D000889 5.8e-07 58.2 131 30.5
SalBow5G0471 Salvia bowleyana HOM05D000751 ORTHO05D000889 5.8e-07 58.2 152 31.6
Solyc09g018160.3 Solanum lycopersicum HOM05D000751 ORTHO05D000889 7.6e-07 57.8 133 33.1
BcaC06g33337 Brassica carinata HOM05D000751 ORTHO05D000889 1.0e-06 57.4 110 37.3
A03p48390 Brassica napus HOM05D000751 ORTHO05D000889 1.0e-06 57.4 112 34.8
CiPaw.02G039900 Carya illinoinensis HOM05D000751 ORTHO05D000889 1.0e-06 57.4 148 31.1
Duzib138G1949 Durio zibethinus HOM05D000751 ORTHO05D000889 1.0e-06 57.4 157 29.9
THA.LOC104802065 Tarenaya hassleriana HOM05D000751 ORTHO05D000889 1.0e-06 57.4 152 32.9
TAR374G0065 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.0e-06 57.4 148 31.1
TAR374G0274 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.0e-06 57.4 148 31.1
TAR375G0110 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.0e-06 57.4 148 30.4
Actinidia23844 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.3e-06 57.0 147 30.6
MSTRG.20898 Avicennia marina HOM05D000751 ORTHO05D000889 1.3e-06 57.0 114 36.0
CSS0012175 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D012430 1.3e-06 57.0 87 43.7
CSS0021673 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D012430 1.3e-06 57.0 87 43.7
Rhsim13G0060500 Rhododendron simsii HOM05D000751 ORTHO05D000889 1.3e-06 57.0 163 31.9
ClCG03G000110 Citrullus lanatus HOM05D000751 ORTHO05D000889 1.7e-06 56.6 151 31.8
Ciclev10023855m.g Citrus clementina HOM05D000751 ORTHO05D000889 1.7e-06 56.6 148 31.8
Lj1g0025738 Lotus japonicus HOM05D000751 ORTHO05D000889 1.7e-06 56.6 150 32.0
FvH4_7g16250 Fragaria vesca HOM05D000751 ORTHO05D000889 2.2e-06 56.2 148 31.1
FAN06G1708 Fragaria x ananassa HOM05D000751 ORTHO05D000889 2.2e-06 56.2 148 31.1
FAN10G1631 Fragaria x ananassa HOM05D000751 ORTHO05D000889 2.2e-06 56.2 148 31.1
FAN10G3268 Fragaria x ananassa HOM05D000751 ORTHO05D000889 2.2e-06 56.2 148 31.1
Gohir.A07G138300 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.2e-06 56.2 150 30.7
Gohir.D07G143400 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.2e-06 56.2 150 31.3
Gohir.D07G143466 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.2e-06 56.2 150 31.3
Manes.05G024100 Manihot esculenta HOM05D000751 ORTHO05D000889 2.2e-06 56.2 114 34.2
Nn3g19032 Nelumbo nucifera HOM05D000751 ORTHO05D000889 2.2e-06 56.2 148 32.4
PGR031G2844 Punica granatum HOM05D000751 ORTHO05D000889 2.2e-06 56.2 148 31.1
Sopen09g010800 Solanum pennellii HOM05D000751 ORTHO05D000889 2.2e-06 56.2 133 32.3
FAN03G1458 Fragaria x ananassa HOM05D000751 ORTHO05D000889 2.9e-06 55.8 148 31.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.9e-06 55.8 112 34.8
Nitab4.5_0008279g0040 Nicotiana tabacum HOM05D000751 ORTHO05D000889 2.9e-06 55.8 148 31.8
SGA_v2.0_scaffold43G16370 Striga asiatica HOM05D000751 ORTHO05D000889 2.9e-06 55.8 152 30.9
Ca_30811_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 3.8e-06 55.5 148 29.7
Migut.B01854 Erythranthe guttata HOM05D000751 ORTHO05D000889 3.8e-06 55.5 118 34.7
Lsat_1_v5_gn_8_107961 Lactuca sativa HOM05D000751 ORTHO05D000889 3.8e-06 55.5 138 31.2
Nitab4.5_0000838g0100 Nicotiana tabacum HOM05D000751 ORTHO05D000889 3.8e-06 55.5 157 30.6
Ah.05g179730 Amaranthus hybridus HOM05D000751 ORTHO05D000889 4.9e-06 55.1 148 31.1
arahy.Tifrunner.gnm1.ann1.2FK0GQ Arachis hypogaea HOM05D000751 ORTHO05D000889 4.9e-06 55.1 148 30.4
arahy.Tifrunner.gnm1.ann1.8G1IGY Arachis hypogaea HOM05D000751 ORTHO05D000889 4.9e-06 55.1 148 30.4
Lj9A596T52 Lonicera japonica HOM05D000751 ORTHO05D000889 4.9e-06 55.1 114 34.2
Manes.01G247200 Manihot esculenta HOM05D000751 ORTHO05D000889 4.9e-06 55.1 114 35.1
Nitab4.5_0001829g0050 Nicotiana tabacum HOM05D000751 ORTHO05D000889 4.9e-06 55.1 149 32.2
Oeu026814.1 Olea europaea HOM05D000751 ORTHO05D000889 4.9e-06 55.1 114 34.2
Peaxi162Scf00786g00440 Petunia axillaris HOM05D000751 ORTHO05D000889 4.9e-06 55.1 148 31.8
SEGI_25351 Sequoiadendron giganteum HOM05D000751 ORTHO05D012430 4.9e-06 55.1 83 39.8
Solyc10g009490.2 Solanum lycopersicum HOM05D000751 ORTHO05D000889 4.9e-06 55.1 114 35.1
Sopen10g005300 Solanum pennellii HOM05D000751 ORTHO05D000889 4.9e-06 55.1 114 35.1
SGA_v2.0_scaffold11G05730 Striga asiatica HOM05D000751 ORTHO05D000889 4.9e-06 55.1 114 34.2
vmacro02885 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 4.9e-06 55.1 150 32.0
BraA03t13946Z Brassica rapa HOM05D000751 ORTHO05D000889 6.5e-06 54.7 110 36.4
FAN01G0360 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.5e-06 54.7 147 30.6
Gorai.001G155400 Gossypium raimondii HOM05D000751 ORTHO05D000889 6.5e-06 54.7 150 31.3
HanXRQChr04g0120291 Helianthus annuus HOM05D000751 ORTHO05D000889 6.5e-06 54.7 148 31.8
Oeu004943.2 Olea europaea HOM05D000751 ORTHO05D000889 6.5e-06 54.7 112 34.8
Oeu057993.1 Olea europaea HOM05D000751 ORTHO05D000889 6.5e-06 54.7 111 30.6
Lsat_1_v5_gn_4_33301 Lactuca sativa HOM05D000751 ORTHO05D000889 8.4e-06 54.3 148 31.1
Lj3g0026226 Lotus japonicus HOM05D000751 ORTHO05D000889 8.4e-06 54.3 142 31.0
Lalb_Chr18g0044381 Lupinus albus HOM05D000751 ORTHO05D000889 8.4e-06 54.3 114 33.3
Peaxi162Scf00218g00063 Petunia axillaris HOM05D000751 ORTHO05D000889 8.4e-06 54.3 114 33.3
Phvul.006G112100 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 8.4e-06 54.3 148 29.7
Hund11684 Selenicereus undatus HOM05D000751 ORTHO05D000889 8.4e-06 54.3 114 32.5
Sc26g0000690 Simmondsia chinensis HOM05D000751 ORTHO05D000889 8.4e-06 54.3 114 34.2
Solyc01g095730.4 Solanum lycopersicum HOM05D000751 ORTHO05D000889 8.4e-06 54.3 114 34.2
Sopen01g039480 Solanum pennellii HOM05D000751 ORTHO05D000889 8.4e-06 54.3 114 34.2


User provided reference genes

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