Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 5.5e-204 714.5 491 100.0
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 8.2e-184 647.5 492 93.7
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 8.2e-184 647.5 492 93.7
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.1e-183 645.6 492 92.5
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.1e-179 631.3 492 92.7
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 7.9e-179 630.9 492 92.5
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 4.1e-151 538.9 496 83.7
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 1.0e-146 524.2 498 82.1
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.0e-133 481.1 497 77.7
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 1.0e-117 427.9 521 71.8
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 5.1e-117 425.6 507 71.6
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 5.2e-114 415.6 527 69.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 2.0e-105 387.1 526 66.2
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.0e-105 387.1 516 67.4
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 8.4e-104 381.7 471 72.4
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 3.2e-103 379.8 495 69.1
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.6e-102 377.5 521 65.6
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.0e-101 374.8 471 70.5
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.7e-101 374.0 475 69.3
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.3e-101 373.6 509 66.8
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.3e-101 373.6 471 70.3
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 5.1e-101 372.5 472 69.9
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 5.1e-101 372.5 472 69.9
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 5.1e-101 372.5 487 70.2
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.1e-100 371.3 484 68.8
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.5e-100 370.9 480 68.8
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.3e-100 369.8 484 68.8
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 4.3e-100 369.4 488 67.8
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 7.3e-100 368.6 480 68.5
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 1.3e-99 367.9 477 69.4
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.1e-98 364.8 480 68.1
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 1.4e-98 364.4 514 68.3
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 3.4e-97 359.8 462 71.6
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.1e-95 354.8 501 66.5
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 4.2e-95 352.8 465 68.2
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 2.1e-94 350.5 493 57.0
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 7.9e-94 348.6 466 68.2
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 7.9e-94 348.6 504 66.9
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.3e-93 347.8 480 64.8
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.3e-93 347.8 519 63.6
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 3.0e-93 346.7 521 60.5
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 8.7e-93 345.1 490 66.9
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 8.7e-93 345.1 500 65.2
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 7.4e-92 342.0 495 66.5
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.3e-91 341.3 492 65.7
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.8e-91 340.1 506 64.2
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 4.8e-91 339.3 517 63.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 6.2e-91 339.0 481 66.7
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 8.1e-91 338.6 458 69.7
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 5.3e-90 335.9 495 65.9
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.6e-89 333.6 371 79.8
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.4e-89 333.2 510 61.4
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 3.4e-89 333.2 506 61.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 7.6e-89 332.0 458 65.1
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.0e-88 331.6 460 68.5
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.9e-88 330.1 444 68.2
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 2.9e-88 330.1 527 61.7
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.9e-87 327.4 497 64.2
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 2.5e-87 327.0 338 84.9
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 5.5e-87 325.9 442 68.1
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.7e-86 323.6 398 75.4
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 6.0e-86 322.4 466 65.0
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 3.9e-85 319.7 484 63.0
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 3.9e-85 319.7 465 67.3
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 2.5e-84 317.0 495 65.7
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 5.7e-84 315.8 503 61.6
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 5.7e-84 315.8 476 66.0
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 7.4e-84 315.5 401 72.3
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.1e-83 313.9 509 64.0
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 6.2e-83 312.4 492 63.8
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.4e-82 311.2 451 67.6
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.8e-82 310.8 456 66.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 5.3e-82 309.3 505 61.0
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 3.8e-80 303.1 506 61.9
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 6.5e-80 302.4 496 60.5
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.4e-79 301.2 456 64.9
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 7.2e-79 298.9 495 60.0
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 1.2e-78 298.1 480 64.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 4.6e-78 296.2 415 68.9
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 7.9e-78 295.4 505 59.8
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.1e-76 291.6 484 61.8
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.9e-76 290.8 484 62.0
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.6e-75 287.7 488 64.3
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 2.0e-73 280.8 358 76.8
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 8.5e-72 275.4 447 62.2
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.9e-71 274.2 466 58.8
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 9.4e-71 271.9 511 55.8
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.6e-70 271.2 292 88.7
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 3.0e-69 266.9 448 60.5
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.3e-67 261.5 485 59.6
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 2.2e-67 260.8 520 53.5
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 2.9e-64 250.4 466 58.8
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.9e-63 247.7 455 58.9
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 2.4e-58 230.7 292 84.6
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.6e-57 228.0 476 54.8
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.5e-55 221.5 336 71.4
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.6e-54 218.0 352 63.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 4.0e-53 213.4 266 51.1
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.7e-51 208.0 303 59.1
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.9e-48 197.2 450 55.8
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 8.5e-48 195.7 235 87.7
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 1.5e-47 194.9 292 76.7
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.3e-43 181.8 322 49.4
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 5.4e-42 176.4 472 32.6
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 2.2e-40 171.0 119 87.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 2.9e-40 170.6 460 52.2
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 5.5e-39 166.4 290 71.4
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.6e-38 163.7 355 59.2
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.2e-33 148.7 109 86.2
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.7e-32 144.8 218 43.6
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.9e-27 127.5 147 51.0
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.3e-19 102.1 324 53.1
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 4.9e-19 100.1 322 52.5
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.1e-18 97.1 331 29.0
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.4e-18 96.7 373 49.9
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 3.0e-16 90.9 103 49.5
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.5e-15 88.6 323 50.8
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 1.9e-10 71.6 119 47.1
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 2.7e-09 67.8 88 45.5
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 2.3e-08 64.7 86 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 6.6e-08 63.2 326 23.6
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 9.5e-07 59.3 118 28.8


User provided reference genes

Program Settings