Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 6.5e-48 193.7 99 100.0
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.8e-45 185.7 99 93.9
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 4.0e-45 184.5 99 93.9
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 4.0e-45 184.5 99 93.9
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 2.6e-44 181.8 99 91.9
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 9.8e-44 179.9 96 92.7
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 2.2e-43 178.7 94 93.6
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 4.8e-43 177.6 99 88.9
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 5.4e-42 174.1 99 87.9
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 3.5e-41 171.4 99 84.8
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 7.7e-41 170.2 99 84.8
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 2.3e-40 168.7 99 81.8
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.3e-40 168.7 99 83.8
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 5.0e-40 167.5 99 79.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 8.6e-40 166.8 99 83.8
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 1.1e-39 166.4 99 81.8
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 1.5e-39 166.0 99 81.8
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 1.5e-39 166.0 94 86.2
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.9e-39 165.6 99 79.8
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 1.9e-39 165.6 99 81.8
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 2.5e-39 165.2 99 80.8
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 2.5e-39 165.2 99 80.8
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 2.5e-39 165.2 99 77.8
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.2e-39 164.9 99 79.8
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 3.2e-39 164.9 99 77.8
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.2e-39 164.5 99 78.8
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 4.2e-39 164.5 97 81.4
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 5.5e-39 164.1 99 78.8
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 5.5e-39 164.1 99 77.8
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 7.2e-39 163.7 99 78.8
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 7.2e-39 163.7 99 78.8
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 7.2e-39 163.7 99 80.8
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 7.2e-39 163.7 99 80.8
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 9.5e-39 163.3 99 78.8
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.2e-38 162.9 95 85.3
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 1.6e-38 162.5 99 78.8
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 1.6e-38 162.5 95 84.2
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 1.6e-38 162.5 99 78.8
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 2.1e-38 162.2 99 78.8
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 2.1e-38 162.2 97 78.4
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 2.1e-38 162.2 99 75.8
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 3.6e-38 161.4 99 76.8
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 3.6e-38 161.4 99 76.8
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 4.7e-38 161.0 99 75.8
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 8.0e-38 160.2 92 83.7
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 8.0e-38 160.2 99 77.8
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.0e-37 159.8 99 76.8
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 1.0e-37 159.8 99 76.8
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 1.0e-37 159.8 95 76.8
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 1.0e-37 159.8 99 76.8
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.4e-37 159.5 99 79.8
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.3e-37 158.7 99 77.8
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 3.0e-37 158.3 99 75.8
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 3.0e-37 158.3 99 76.8
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 77.8
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 78.8
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 79.8
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 79.8
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 79.8
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 74.7
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.2e-37 157.5 99 78.8
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 5.2e-37 157.5 95 81.1
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 6.8e-37 157.1 93 80.6
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 6.8e-37 157.1 120 70.0
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 6.8e-37 157.1 97 80.4
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 8.8e-37 156.8 99 75.8
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 1.2e-36 156.4 93 80.6
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 73.7
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 77.8
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.5e-36 156.0 99 77.8
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 1.5e-36 156.0 91 78.0
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 1.5e-36 156.0 95 76.8
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 1.5e-36 156.0 95 78.9
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 2.0e-36 155.6 93 78.5
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 74.7
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 74.7
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 74.7
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 74.7
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 3.4e-36 154.8 99 74.7
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 3.4e-36 154.8 99 74.7
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 3.4e-36 154.8 95 78.9
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 3.4e-36 154.8 99 76.8
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 4.4e-36 154.5 99 74.7
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 4.4e-36 154.5 99 71.7
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 5.7e-36 154.1 99 74.7
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 5.7e-36 154.1 93 79.6
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 5.7e-36 154.1 99 74.7
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 5.7e-36 154.1 99 73.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 5.7e-36 154.1 99 73.7
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 7.5e-36 153.7 99 75.8
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 9.8e-36 153.3 99 73.7
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 9.8e-36 153.3 99 73.7
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 1.3e-35 152.9 99 75.8
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 1.7e-35 152.5 99 72.7
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 1.7e-35 152.5 99 72.7
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 2.8e-35 151.8 93 76.3
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 2.8e-35 151.8 104 72.1
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 2.8e-35 151.8 93 78.5
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 2.8e-35 151.8 99 72.7
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 3.7e-35 151.4 93 77.4
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 4.9e-35 151.0 99 72.7
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 4.9e-35 151.0 99 72.7
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 1.4e-34 149.4 99 72.7
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 70.7
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 3.1e-34 148.3 93 76.3
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 3.1e-34 148.3 97 71.1
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 3.1e-34 148.3 99 72.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 1.6e-33 146.0 99 68.7
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.6e-33 146.0 98 71.4
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 3.5e-33 144.8 113 63.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 5.9e-33 144.1 89 75.3
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 5.9e-33 144.1 97 69.1
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 2.3e-32 142.1 92 68.5
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 8.6e-32 140.2 146 54.8
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 8.6e-32 140.2 97 67.0
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 1.1e-31 139.8 91 74.7
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.9e-31 139.0 93 72.0
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 2.8e-30 135.2 135 54.1
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 6.1e-30 134.0 96 67.7
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 1.2e-28 129.8 102 60.8
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 3.4e-28 128.3 92 67.4
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 5.7e-28 127.5 97 61.9
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.3e-27 126.3 91 63.7
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 1.7e-27 125.9 99 67.7
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 8.3e-27 123.6 75 74.7
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 3.2e-26 121.7 71 81.7
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.1e-26 121.3 70 80.0
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 7.0e-26 120.6 71 81.7
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.6e-25 119.4 71 80.3
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 2.0e-25 119.0 70 78.6
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.7e-25 118.6 91 60.4
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 3.5e-25 118.2 66 83.3
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 2.5e-23 112.1 68 72.1
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 5.6e-23 110.9 66 74.2
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 9.5e-23 110.2 68 73.5
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 9.5e-23 110.2 66 75.8
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 2.8e-22 108.6 87 60.9
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 3.6e-22 108.2 64 75.0
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 2.0e-20 102.4 64 73.4
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 4.4e-20 101.3 65 73.8
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 1.7e-19 99.4 64 68.8
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 2.9e-19 98.6 63 71.4
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 3.7e-19 98.2 96 47.9
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 3.2e-18 95.1 64 67.2
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.6e-14 82.8 95 53.7
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.6e-14 82.8 61 59.0
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 1.6e-14 82.8 90 43.3
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 4.4e-12 74.7 81 43.2


User provided reference genes

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