Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 9.9e-110 400.2 213 100.0
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 6.9e-95 350.9 219 86.3
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 6.9e-95 350.9 219 86.8
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.5e-94 349.7 219 85.8
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 7.4e-89 330.9 209 85.6
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 2.1e-88 329.3 215 82.3
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 2.1e-88 329.3 215 82.3
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 1.4e-58 230.3 215 61.9
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 3.3e-57 225.7 224 58.5
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 1.7e-53 213.4 217 62.2
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 1.3e-48 197.2 213 58.7
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 8.2e-48 194.5 215 58.6
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 2.9e-45 186.0 220 54.1
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 3.8e-45 185.7 216 56.9
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 2.5e-44 183.0 214 54.7
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 3.2e-44 182.6 215 54.9
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 9.4e-44 181.0 215 54.4
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 2.1e-43 179.9 214 55.1
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 2.7e-43 179.5 213 52.6
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 8.0e-43 177.9 210 55.7
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 4.0e-42 175.6 221 49.8
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 4.0e-42 175.6 220 51.4
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 6.8e-42 174.9 206 54.4
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 8.8e-42 174.5 223 50.7
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 2.0e-41 173.3 215 50.2
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 2.6e-41 172.9 216 51.9
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 5.7e-41 171.8 215 49.8
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 2.2e-40 169.9 215 52.6
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 2.8e-40 169.5 214 51.9
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.1e-39 167.5 215 52.6
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 3.1e-39 166.0 215 49.3
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 1.0e-37 161.0 222 52.7
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.3e-37 160.6 203 51.2
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 2.9e-37 159.5 217 50.2
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 2.5e-36 156.4 219 48.4
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 2.7e-35 152.9 220 48.2
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 1.8e-34 150.2 216 45.8
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 1.8e-34 150.2 222 48.6
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 1.3e-32 144.1 198 49.0
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 1.7e-32 143.7 206 49.0
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.7e-32 143.7 223 47.5
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 2.8e-32 142.9 215 44.2
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 2.8e-32 142.9 209 47.8
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 4.9e-32 142.1 206 47.1
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 4.9e-32 142.1 218 45.0
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 6.3e-32 141.7 215 45.6
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 8.3e-32 141.4 215 44.7
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.8e-31 140.2 215 46.5
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 4.1e-31 139.0 204 47.5
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 5.4e-31 138.7 217 43.8
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 9.2e-31 137.9 206 43.2
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 2.7e-30 136.3 213 44.6
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 3.5e-30 136.0 203 46.8
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 4.5e-30 135.6 201 41.8
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 5.0e-29 132.1 214 42.5
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 6.6e-29 131.7 203 45.8
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 1.1e-28 131.0 203 46.8
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 1.5e-28 130.6 235 41.3
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 3.3e-28 129.4 218 44.5
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 9.5e-28 127.9 203 44.3
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 1.2e-27 127.5 202 47.0
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.2e-27 127.5 204 47.5
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 3.6e-27 125.9 213 42.7
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 1.4e-26 124.0 197 44.7
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 1.8e-26 123.6 228 44.7
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.3e-26 123.2 222 41.9
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 5.2e-26 122.1 247 37.7
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.5e-25 120.6 205 42.9
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 3.7e-24 115.9 215 37.7
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 4.9e-24 115.5 201 39.8
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 2.4e-23 113.2 99 58.6
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 3.2e-23 112.8 200 38.0
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 3.2e-23 112.8 205 44.4
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 2.7e-22 109.8 196 42.9
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 4.6e-22 109.0 156 49.4
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 7.8e-22 108.2 213 39.9
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 1.3e-21 107.5 201 41.3
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 1.3e-21 107.5 196 41.8
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.7e-21 107.1 214 40.7
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 2.3e-21 106.7 205 40.5
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 2.3e-21 106.7 213 39.4
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 3.0e-21 106.3 204 40.7
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 5.6e-20 102.1 215 37.2
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 5.6e-20 102.1 189 39.7
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 3.6e-19 99.4 207 39.6
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 4.7e-19 99.0 151 47.7
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 5.8e-17 92.0 152 44.7
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 4.9e-16 89.0 168 38.1
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 6.4e-16 88.6 200 36.0
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 1.1e-15 87.8 162 36.4
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.9e-15 87.0 202 36.1
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 3.5e-14 82.8 213 32.9
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 1.0e-13 81.3 158 42.4
Os01g0532300 Oryza sativa ssp. japonica HOM05D007542 ORTHO05D009519 3.7e-08 62.8 37 73.0
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.1e-07 61.2 187 30.5
Glyma.02G293000 Glycine max HOM05D007542 ORTHO05D009519 5.4e-07 58.9 123 40.7
SEGI_03822 Sequoiadendron giganteum HOM05D007542 ORTHO05D009519 1.2e-06 57.8 46 60.9


User provided reference genes

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