Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1763.8 922 100.0
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1562.7 939 87.3
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1561.6 924 89.5
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1500.0 887 88.0
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1422.5 1007 77.2
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 0.0e+00 1366.7 919 77.0
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1322.4 957 75.9
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 0.0e+00 1320.1 854 78.7
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 0.0e+00 1260.4 742 88.8
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 0.0e+00 1227.6 923 69.0
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 0.0e+00 1156.7 920 66.0
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 0.0e+00 1115.1 928 64.0
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 0.0e+00 1108.6 880 65.8
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 0.0e+00 1101.3 875 64.7
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 0.0e+00 1098.6 913 62.7
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 0.0e+00 1080.5 915 61.5
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 0.0e+00 1078.5 919 60.0
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 0.0e+00 1078.2 880 63.8
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 3.2e-311 1071.6 917 61.5
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 2.1e-310 1068.9 914 61.4
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 8.1e-310 1067.0 924 60.7
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 2.4e-309 1065.4 919 60.2
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.2e-308 1063.1 911 60.4
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.5e-308 1062.8 924 60.6
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 1.8e-304 1049.3 933 58.0
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 5.1e-304 1047.7 885 60.0
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 8.7e-304 1047.0 914 60.5
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 1.1e-303 1046.6 969 57.2
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 2.5e-303 1045.4 919 58.7
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 9.0e-301 1036.9 907 60.7
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 9.0e-301 1036.9 911 58.7
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 1.9e-298 1029.2 906 58.7
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 6.0e-297 1024.2 969 58.9
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 3.0e-296 1021.9 917 58.7
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 3.0e-296 1021.9 911 58.3
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 5.1e-296 1021.1 915 58.0
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 7.2e-290 1000.7 912 58.3
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 3.9e-288 995.0 911 57.5
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 4.3e-287 991.5 906 57.4
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 7.2e-282 974.2 910 57.6
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 3.5e-276 955.3 910 56.0
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 1.2e-273 946.8 786 62.1
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 5.3e-269 931.4 912 54.9
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 7.0e-269 931.0 731 64.7
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 3.2e-266 922.2 932 54.1
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.2e-265 920.2 907 53.3
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.4e-264 916.8 916 53.1
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 3.0e-264 915.6 911 54.3
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 4.0e-264 915.2 910 53.5
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 5.2e-264 914.8 911 52.0
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 2.8e-262 909.1 922 52.8
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 5.3e-261 904.8 911 50.9
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 5.0e-259 898.3 904 54.9
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 5.5e-258 894.8 908 52.0
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 1.6e-257 893.3 910 52.3
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 2.3e-256 889.4 907 52.3
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 1.2e-255 887.1 867 51.9
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 1.3e-254 883.6 918 50.8
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 1.7e-254 883.2 908 50.9
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 2.4e-253 879.4 912 50.9
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 2.7e-252 875.9 920 51.5
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 5.9e-252 874.8 911 51.4
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 6.3e-246 854.7 906 50.9
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 1.6e-244 850.1 898 50.3
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 5.9e-244 848.2 897 51.1
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 1.6e-241 840.1 911 50.6
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 2.1e-241 839.7 907 50.4
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 2.4e-237 826.2 908 48.6
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 2.0e-236 823.2 803 55.7
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 7.3e-234 814.7 934 49.0
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 9.5e-234 814.3 844 51.9
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 6.8e-232 808.1 908 48.5
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 1.3e-227 793.9 753 55.0
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 1.7e-222 776.9 941 47.4
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 2.0e-215 753.4 963 47.0
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 3.0e-211 739.6 837 49.1
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 6.4e-206 721.8 649 59.2
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 6.4e-206 721.8 908 46.1
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 4.8e-185 652.5 673 52.7
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 1.0e-182 644.8 869 42.7
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 1.8e-179 634.0 964 39.3
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 8.8e-171 605.1 501 61.7
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 2.7e-156 557.0 945 36.3
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 1.1e-154 551.6 514 56.8
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 2.6e-154 550.4 862 37.4
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 8.8e-147 525.4 901 36.8
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 3.0e-139 500.4 509 53.2
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 6.1e-132 476.1 435 58.2
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 3.5e-127 460.3 858 35.1
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 6.2e-124 449.5 480 52.9
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 1.3e-113 415.2 415 52.5
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.9e-109 401.4 466 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 1.1e-107 395.6 644 38.7
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 1.8e-107 394.8 383 55.1
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 3.8e-97 360.5 398 48.2
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 2.3e-94 351.3 333 56.2
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 5.1e-86 323.6 269 62.5
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 6.2e-84 316.6 382 48.7
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 6.2e-84 316.6 404 43.6
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 2.0e-66 258.5 448 35.0
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 9.7e-61 239.6 263 51.7
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 9.7e-61 239.6 263 51.7
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.1e-56 226.1 286 43.4
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 4.6e-55 220.7 534 29.4
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 6.3e-52 210.3 207 49.8
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 1.8e-46 192.2 199 47.7
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 1.5e-45 189.1 204 50.0
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 3.7e-44 184.5 203 50.7
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 3.7e-44 184.5 203 50.7
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.3e-38 165.2 215 41.4
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 2.9e-33 148.3 150 48.0
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 8.5e-33 146.7 169 49.7
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 3.2e-32 144.8 246 39.0
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 2.3e-30 138.7 169 46.2
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 1.1e-27 129.8 185 41.6
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 3.1e-27 128.3 84 72.6
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 1.6e-26 125.9 82 73.2
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 1.1e-24 119.8 95 55.8
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.6e-23 115.9 140 47.9
MD16G1253600 Malus domestica HOM05D005193 ORTHO05D006316 2.1e-23 115.5 65 84.6
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 3.6e-23 114.8 114 60.5
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 6.1e-23 114.0 90 63.3
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 6.1e-23 114.0 90 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 1.4e-22 112.8 110 53.6
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 7.5e-21 107.1 113 57.5
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 9.8e-21 106.7 88 59.1
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 2.2e-20 105.5 92 51.1
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 1.6e-18 99.4 123 47.2
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.7e-18 98.6 193 35.2
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 4.5e-18 97.8 127 48.8
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 7.7e-18 97.1 100 45.0
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 4.3e-16 91.3 121 45.5
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 5.6e-16 90.9 144 34.0
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 9.5e-16 90.1 75 62.7
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 2.9e-12 78.6 87 46.0
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 8.3e-12 77.0 113 44.2
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 9.2e-11 73.6 89 42.7
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 7.8e-10 70.5 79 41.8
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.3e-09 68.9 82 41.5
TPR.G2798 Trifolium pratense HOM05D005193 ORTHO05D006316 5.0e-09 67.8 70 52.9
SEGI_26698 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 4.3e-08 64.7 96 33.3
SEGI_12195 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.0e-06 60.1 92 32.6
Hund02002 Selenicereus undatus HOM05D005193 ORTHO05D006316 1.4e-06 59.7 56 50.0
CDE02G4328 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 5.2e-06 57.8 78 38.5


User provided reference genes

Program Settings