Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040611 Rosa chinensis HOM05D000222 ORTHO05D011388 8.5e-44 179.9 86 100.0
FvH4_2g38300 Fragaria vesca HOM05D000222 ORTHO05D000329 1.3e-15 86.3 63 71.4
FAN15G0622 Fragaria x ananassa HOM05D000222 ORTHO05D000329 1.3e-15 86.3 63 71.4
FAN27G0624 Fragaria x ananassa HOM05D000222 ORTHO05D000329 1.3e-15 86.3 63 71.4
RcHm_v2.0_Chr6g0303071 Rosa chinensis HOM05D000222 ORTHO05D000329 1.3e-15 86.3 63 71.4
Ciclev10000296m.g Citrus clementina HOM05D000222 ORTHO05D000329 2.2e-15 85.5 63 71.4
Nitab4.5_0003251g0080 Nicotiana tabacum HOM05D000222 ORTHO05D000329 2.2e-15 85.5 63 71.4
Actinidia15430 Actinidia chinensis HOM05D000222 ORTHO05D000329 2.8e-15 85.1 63 69.8
SGA_v2.0_scaffold11G05934 Striga asiatica HOM05D000222 ORTHO05D000329 2.8e-15 85.1 63 69.8
CARHR231600 Cardamine hirsuta HOM05D000222 ORTHO05D000329 3.7e-15 84.7 54 79.6
Glyma.14G219700 Glycine max HOM05D000222 ORTHO05D000329 3.7e-15 84.7 63 71.4
Lj5g0005976 Lotus japonicus HOM05D000222 ORTHO05D000329 3.7e-15 84.7 63 71.4
Manes.18G012500 Manihot esculenta HOM05D000222 ORTHO05D000329 3.7e-15 84.7 63 71.4
Nn5g30723 Nelumbo nucifera HOM05D000222 ORTHO05D000329 3.7e-15 84.7 54 77.8
TPR.G26394 Trifolium pratense HOM05D000222 ORTHO05D000329 3.7e-15 84.7 63 68.3
HPP92_012933 Vanilla planifolia HOM05D000222 ORTHO05D000329 3.7e-15 84.7 63 71.4
VMungo0647G1547 Vigna mungo HOM05D000222 ORTHO05D000329 3.7e-15 84.7 63 71.4
Cfa013966 Carpinus fangiana HOM05D000222 ORTHO05D000329 4.8e-15 84.3 63 69.8
FAN20G2674 Fragaria x ananassa HOM05D000222 ORTHO05D000329 4.8e-15 84.3 63 69.8
Manes.18G012200 Manihot esculenta HOM05D000222 ORTHO05D000329 4.8e-15 84.3 54 79.6
TAR381G1457 Trochodendron aralioides HOM05D000222 ORTHO05D000329 4.8e-15 84.3 54 75.9
TAR628G0053 Trochodendron aralioides HOM05D000222 ORTHO05D000329 4.8e-15 84.3 54 75.9
BolC1t01873H Brassica oleracea HOM05D000222 ORTHO05D000329 6.3e-15 84.0 61 70.5
Glyma.17G258700 Glycine max HOM05D000222 ORTHO05D000329 6.3e-15 84.0 63 71.4
Nitab4.5_0000337g0070 Nicotiana tabacum HOM05D000222 ORTHO05D000329 6.3e-15 84.0 63 69.8
QL02p011881 Quercus lobata HOM05D000222 ORTHO05D000329 6.3e-15 84.0 63 68.3
vmacro04362 Vaccinium macrocarpon HOM05D000222 ORTHO05D000329 6.3e-15 84.0 54 77.8
MSTRG.1183 Avicennia marina HOM05D000222 ORTHO05D000329 8.3e-15 83.6 63 69.8
Migut.N03167 Erythranthe guttata HOM05D000222 ORTHO05D000329 8.3e-15 83.6 63 68.3
Lalb_Chr03g0033421 Lupinus albus HOM05D000222 ORTHO05D000329 8.3e-15 83.6 63 69.8
Lalb_Chr19g0131441 Lupinus albus HOM05D000222 ORTHO05D000329 8.3e-15 83.6 63 69.8
Nitab4.5_0000337g0060 Nicotiana tabacum HOM05D000222 ORTHO05D000329 8.3e-15 83.6 63 69.8
Peaxi162Scf00553g00114 Petunia axillaris HOM05D000222 ORTHO05D000329 8.3e-15 83.6 63 69.8
Lsat_1_v5_gn_8_30781 Lactuca sativa HOM05D000222 ORTHO05D000329 1.1e-14 83.2 63 68.3
Phvul.001G005200 Phaseolus vulgaris HOM05D000222 ORTHO05D000329 1.1e-14 83.2 63 69.8
SalBow8G4062 Salvia bowleyana HOM05D000222 ORTHO05D000329 1.1e-14 83.2 63 68.3
Zm00001eb239320 Zea mays HOM05D000222 ORTHO05D011388 1.1e-14 83.2 55 76.4
Zm00001eb346330 Zea mays HOM05D000222 ORTHO05D011388 1.1e-14 83.2 55 76.4
ClCG08G014210 Citrullus lanatus HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 68.3
Haze_22648 Corylus avellana HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 68.3
MELO3C011021.2 Cucumis melo HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 68.3
CsaV3_2G029630 Cucumis sativus L. HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 68.3
Duzib116G0368 Durio zibethinus HOM05D000222 ORTHO05D000329 1.4e-14 82.8 54 75.9
ECA233G5047 Erigeron canadensis HOM05D000222 ORTHO05D000329 1.4e-14 82.8 54 75.9
Peaxi162Scf00553g00086 Petunia axillaris HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 69.8
Potri.005G241100 Populus trichocarpa HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 69.8
Prupe.1G363900 Prunus persica HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 69.8
Sabra05G0186600 Salix brachista HOM05D000222 ORTHO05D000329 1.4e-14 82.8 63 69.8
Zm00001eb331810 Zea mays HOM05D000222 ORTHO05D000329 1.4e-14 82.8 55 76.4
CANSAT78G1241 Cannabis sativa HOM05D000222 ORTHO05D000329 1.8e-14 82.4 63 68.3
CDE05G1631 Ceratophyllum demersum HOM05D000222 ORTHO05D000329 1.8e-14 82.4 54 75.9
Dinv39529 Davidia involucrata HOM05D000222 ORTHO05D000329 1.8e-14 82.4 63 68.3
PGR083G1489 Punica granatum HOM05D000222 ORTHO05D000329 1.8e-14 82.4 63 68.3
Sed0003929 Sechium edule HOM05D000222 ORTHO05D000329 1.8e-14 82.4 63 66.7
Solyc04g081570.3 Solanum lycopersicum HOM05D000222 ORTHO05D000329 1.8e-14 82.4 63 68.3
Sopen04g035180 Solanum pennellii HOM05D000222 ORTHO05D000329 1.8e-14 82.4 63 68.3
THA.LOC104813226 Tarenaya hassleriana HOM05D000222 ORTHO05D000329 1.8e-14 82.4 54 77.8
TAR536G0015 Trochodendron aralioides HOM05D000222 ORTHO05D000329 1.8e-14 82.4 54 74.1
C01p19440 Brassica napus HOM05D000222 ORTHO05D000329 2.4e-14 82.0 54 77.8
BolC7t45836H Brassica oleracea HOM05D000222 ORTHO05D000329 2.4e-14 82.0 55 76.4
CAN.G311.42 Capsicum annuum HOM05D000222 ORTHO05D000329 2.4e-14 82.0 63 68.3
AUR62040542 Chenopodium quinoa HOM05D000222 ORTHO05D000329 2.4e-14 82.0 63 69.8
AUR62041482 Chenopodium quinoa HOM05D000222 ORTHO05D000329 2.4e-14 82.0 63 69.8
Medtr1g025430 Medicago truncatula HOM05D000222 ORTHO05D000329 2.4e-14 82.0 63 66.7
Sc02g0008650 Simmondsia chinensis HOM05D000222 ORTHO05D000329 2.4e-14 82.0 63 68.3
Atru.chr13.271 Acer truncatum HOM05D000222 ORTHO05D000329 3.1e-14 81.6 63 68.3
ATR0810G217 Amborella trichopoda HOM05D000222 ORTHO05D000329 3.1e-14 81.6 54 74.1
Cpa.g.sc64.164 Carica papaya HOM05D000222 ORTHO05D000329 3.1e-14 81.6 54 75.9
Lalb_Chr08g0246171 Lupinus albus HOM05D000222 ORTHO05D000329 3.1e-14 81.6 54 74.1
MD08G1011200 Malus domestica HOM05D000222 ORTHO05D000329 3.1e-14 81.6 63 69.8
Ca_13433_v3 Cicer arietinum L. HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 66.7
Migut.C00851 Erythranthe guttata HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 66.7
Lj4C798T7 Lonicera japonica HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 66.7
Lalb_Chr11g0061831 Lupinus albus HOM05D000222 ORTHO05D000329 4.1e-14 81.3 54 74.1
Oeu046282.1 Olea europaea HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 68.3
Psat6g002360 Pisum sativum HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 68.3
TWI12G1180 Tripterygium wilfordii HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 68.3
TWI56G0657 Tripterygium wilfordii HOM05D000222 ORTHO05D000329 4.1e-14 81.3 63 68.3
Aqoxy1G02465 Aquilegia oxysepala HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 75.9
Aqoxy6G02232 Aquilegia oxysepala HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 75.9
EL10Ac1g02175 Beta vulgaris HOM05D000222 ORTHO05D000329 5.4e-14 80.9 63 68.3
CiPaw.08G067100 Carya illinoinensis HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 74.1
CDE05G2968 Ceratophyllum demersum HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 74.1
HanXRQChr13g0387091 Helianthus annuus HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 74.1
Hma1.2p1_0733F.1_g210310 Hydrangea macrophylla HOM05D000222 ORTHO05D000329 5.4e-14 80.9 63 68.3
Os06g0716700 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 75.9
Sc15g0004910 Simmondsia chinensis HOM05D000222 ORTHO05D000329 5.4e-14 80.9 63 68.3
Zm00001eb272290 Zea mays HOM05D000222 ORTHO05D000329 5.4e-14 80.9 54 75.9
arahy.Tifrunner.gnm1.ann1.P8FSM4 Arachis hypogaea HOM05D000222 ORTHO05D000329 7.0e-14 80.5 54 74.1
arahy.Tifrunner.gnm1.ann1.T76A9L Arachis hypogaea HOM05D000222 ORTHO05D000329 7.0e-14 80.5 54 74.1
MSTRG.25258 Avicennia marina HOM05D000222 ORTHO05D000329 7.0e-14 80.5 63 66.7
BcaC07g38137 Brassica carinata HOM05D000222 ORTHO05D000329 7.0e-14 80.5 55 74.5
BcaC09g50898 Brassica carinata HOM05D000222 ORTHO05D000329 7.0e-14 80.5 54 75.9
Cc10_g01540 Coffea canephora HOM05D000222 ORTHO05D000329 7.0e-14 80.5 63 65.1
COL.COLO4_26130 Corchorus olitorius HOM05D000222 ORTHO05D000329 7.0e-14 80.5 63 66.7
DCAR_013875 Daucus carota HOM05D000222 ORTHO05D000329 7.0e-14 80.5 54 75.9
Duzib093G0379 Durio zibethinus HOM05D000222 ORTHO05D000329 7.0e-14 80.5 54 74.1
Lj4C22T9 Lonicera japonica HOM05D000222 ORTHO05D000329 7.0e-14 80.5 63 66.7
CSS0018705 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D000329 9.1e-14 80.1 63 66.7
PGSC0003DMG400009940 Solanum tuberosum HOM05D000222 ORTHO05D000329 9.1e-14 80.1 63 66.7
AL7G29090 Arabidopsis lyrata HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
AT4G24190 Arabidopsis thaliana HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
BcaNung01125 Brassica carinata HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
A01p15520 Brassica napus HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
A08p21570 Brassica napus HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
BolC8t48563H Brassica oleracea HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
BraA01t01491Z Brassica rapa HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
BraA08t34104Z Brassica rapa HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
Carub.0007s1690 Capsella rubella HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
Thhalv10024414m.g Eutrema salsugineum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 75.9
Gohir.A06G002800 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 74.1
Gohir.A06G002900 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 74.1
Gohir.D06G005800 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 74.1
Gohir.D06G005900 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 74.1
Gorai.010G003000 Gossypium raimondii HOM05D000222 ORTHO05D000329 1.2e-13 79.7 54 74.1
PSO541G0316 Papaver somniferum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 63 65.1
PSO675G6717 Papaver somniferum HOM05D000222 ORTHO05D000329 1.2e-13 79.7 63 65.1
Zm00001eb025010 Zea mays HOM05D000222 ORTHO05D011388 1.2e-13 79.7 53 75.5
Zm00001eb356570 Zea mays HOM05D000222 ORTHO05D011388 1.2e-13 79.7 53 75.5
A03p55100 Brassica napus HOM05D000222 ORTHO05D000329 1.6e-13 79.3 54 75.9
BraA03t14570Z Brassica rapa HOM05D000222 ORTHO05D000329 1.6e-13 79.3 54 75.9
Gohir.A01G110500 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.6e-13 79.3 54 72.2
Gohir.D01G097100 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.6e-13 79.3 54 72.2
Gorai.002G122800 Gossypium raimondii HOM05D000222 ORTHO05D000329 1.6e-13 79.3 54 72.2
Nn6g32037 Nelumbo nucifera HOM05D000222 ORTHO05D000329 1.6e-13 79.3 54 70.4
Aa31sc288G10 Aethionema arabicum HOM05D000222 ORTHO05D000329 2.0e-13 79.0 54 74.1
DCAR_023014 Daucus carota HOM05D000222 ORTHO05D000329 2.0e-13 79.0 63 65.1
Eucgr.H00972 Eucalyptus grandis HOM05D000222 ORTHO05D000329 2.0e-13 79.0 63 63.5
GSVIVG01009931001 Vitis vinifera HOM05D000222 ORTHO05D000329 2.0e-13 79.0 63 65.1
Zm00001eb228120 Zea mays HOM05D000222 ORTHO05D000329 2.0e-13 79.0 54 74.1
Glyma.09G109401 Glycine max HOM05D000222 ORTHO05D011388 2.7e-13 78.6 56 71.4
Hma1.2p1_0013F.1_g008210 Hydrangea macrophylla HOM05D000222 ORTHO05D000329 2.7e-13 78.6 63 65.1
SHI08058 Sapria himalayana HOM05D000222 ORTHO05D000329 2.7e-13 78.6 54 75.9
Sp7g22160 Schrenkiella parvula HOM05D000222 ORTHO05D000329 2.7e-13 78.6 54 74.1
Sed0002325 Sechium edule HOM05D000222 ORTHO05D000329 3.5e-13 78.2 63 65.1
C07p53420 Brassica napus HOM05D000222 ORTHO05D000329 4.5e-13 77.8 54 74.1
HanXRQChr12g0366871 Helianthus annuus HOM05D000222 ORTHO05D000329 4.5e-13 77.8 54 68.5
RhsimUnG0065400 Rhododendron simsii HOM05D000222 ORTHO05D000329 4.5e-13 77.8 54 72.2
Thecc.08G046300 Theobroma cacao HOM05D000222 ORTHO05D000329 7.7e-13 77.0 54 70.4
MBI05_g33510_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D000329 1.0e-12 76.6 54 70.4
Hund05159 Selenicereus undatus HOM05D000222 ORTHO05D000329 1.0e-12 76.6 54 74.1
CBR_g34543 Chara braunii HOM05D000222 ORTHO05D000329 1.7e-12 75.9 54 74.1
MBI05_g33509_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D000329 1.7e-12 75.9 54 70.4
Pp3c14_3360 Physcomitrium patens HOM05D000222 ORTHO05D000329 5.0e-12 74.3 54 68.5
SEGI_06170 Sequoiadendron giganteum HOM05D000222 ORTHO05D000329 6.6e-12 73.9 54 68.5
SMO116G0137 Selaginella moellendorffii HOM05D000222 ORTHO05D000329 1.1e-11 73.2 54 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3459 Anthoceros agrestis HOM05D000222 ORTHO05D000329 1.5e-11 72.8 54 63.0
Mapoly0031s0145 Marchantia polymorpha HOM05D000222 ORTHO05D000329 1.5e-11 72.8 54 66.7
SHI28381 Sapria himalayana HOM05D000222 ORTHO05D000329 1.2e-10 69.7 58 62.1
CAN.G606.16 Capsicum annuum HOM05D000222 ORTHO05D000329 2.8e-10 68.6 53 66.0
SHI38129 Sapria himalayana HOM05D000222 ORTHO05D000329 3.6e-10 68.2 55 65.5
Cre02.g080650 Chlamydomonas reinhardtii HOM05D000222 ORTHO05D000329 1.8e-09 65.9 54 59.3
Pp3c8_6510 Physcomitrium patens HOM05D000222 ORTHO05D000329 2.3e-09 65.5 53 58.5
SHI42101 Sapria himalayana HOM05D000222 ORTHO05D000329 5.2e-09 64.3 50 68.0
SHI40500 Sapria himalayana HOM05D000222 ORTHO05D000329 6.8e-09 63.9 61 59.0
SHI40420 Sapria himalayana HOM05D000222 ORTHO05D000329 8.9e-09 63.5 54 63.0
CAN.G79.35 Capsicum annuum HOM05D002324 ORTHO05D011388 1.5e-08 62.8 53 62.3
PRCOL_00003444 Prasinoderma coloniale HOM05D000222 ORTHO05D000329 1.5e-08 62.8 54 53.7
SHI40777 Sapria himalayana HOM05D000222 ORTHO05D000329 1.5e-08 62.8 65 56.9
MCO04G117 Micromonas commoda HOM05D000222 ORTHO05D000329 2.6e-08 62.0 54 57.4
SHI40402 Sapria himalayana HOM05D000222 ORTHO05D000329 4.4e-08 61.2 55 61.8
SHI29975 Sapria himalayana HOM05D000222 ORTHO05D000329 5.7e-08 60.8 54 63.0
SHI43105 Sapria himalayana HOM05D000222 ORTHO05D000329 5.7e-08 60.8 55 61.8
SHI45363 Sapria himalayana HOM05D000222 ORTHO05D000329 9.8e-08 60.1 55 61.8
SHI45896 Sapria himalayana HOM05D000222 ORTHO05D000329 9.8e-08 60.1 55 61.8
SHI40756 Sapria himalayana HOM05D000222 ORTHO05D011712 1.7e-07 59.3 50 64.0
SHI41291 Sapria himalayana HOM05D000222 ORTHO05D011712 1.7e-07 59.3 50 64.0
SHI45771 Sapria himalayana HOM05D000222 ORTHO05D000329 1.7e-07 59.3 55 60.0
SHI53350 Sapria himalayana HOM05D000222 ORTHO05D011388 1.7e-07 59.3 55 60.0
SHI38625 Sapria himalayana HOM05D000222 ORTHO05D000329 3.7e-07 58.2 53 60.4
SHI36219 Sapria himalayana HOM05D000222 ORTHO05D000329 8.3e-07 57.0 55 58.2
SHI25750 Sapria himalayana HOM05D000222 ORTHO05D000329 1.1e-06 56.6 47 63.8
MBI18_g25896_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D011388 4.1e-06 54.7 37 73.0
SHI36157 Sapria himalayana HOM05D000222 ORTHO05D000329 4.1e-06 54.7 55 54.5
SHI36780 Sapria himalayana HOM05D000222 ORTHO05D000329 4.1e-06 54.7 53 58.5


User provided reference genes

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