Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 5.6e-195 684.1 348 100.0
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 4.2e-174 614.8 348 90.2
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 9.3e-174 613.6 348 89.7
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 3.8e-159 565.1 312 91.0
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 1.4e-137 493.4 347 72.6
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 2.9e-135 485.7 347 72.3
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 8.8e-116 421.0 346 65.0
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 8.8e-116 421.0 349 66.2
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 1.3e-114 417.2 351 64.1
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 3.7e-114 415.6 352 62.2
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 3.7e-114 415.6 354 61.9
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 3.1e-113 412.5 351 63.2
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 5.4e-113 411.8 349 64.8
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 1.2e-112 410.6 349 63.3
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 1.2e-112 410.6 348 63.8
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 2.0e-112 409.8 346 63.0
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 2.3e-111 406.4 351 62.7
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 6.6e-111 404.8 348 62.4
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 8.6e-111 404.4 346 62.4
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 1.9e-110 403.3 352 61.4
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 3.3e-110 402.5 354 61.6
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 5.6e-110 401.7 352 61.4
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 1.2e-109 400.6 347 62.8
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 2.1e-109 399.8 352 61.1
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 2.1e-109 399.8 352 61.1
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 2.1e-109 399.8 352 61.1
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 2.1e-109 399.8 352 61.1
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 3.6e-109 399.1 339 62.2
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 6.1e-109 398.3 350 60.9
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.4e-108 397.1 350 60.3
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 2.3e-108 396.4 331 62.5
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 3.0e-108 396.0 303 65.3
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 3.0e-108 396.0 354 61.0
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 4.0e-108 395.6 347 62.0
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 5.2e-108 395.2 353 61.2
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 6.8e-108 394.8 352 59.1
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 8.9e-108 394.4 355 59.7
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 1.5e-107 393.7 340 61.5
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 1.5e-107 393.7 342 59.9
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 4.4e-107 392.1 352 59.4
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 9.8e-107 391.0 350 58.9
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 1.3e-106 390.6 355 59.2
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 1.3e-106 390.6 355 59.2
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 3.2e-105 386.0 350 58.6
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 5.4e-105 385.2 352 59.4
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 1.6e-104 383.6 359 58.5
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 5.9e-104 381.7 328 62.8
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 7.8e-104 381.3 355 57.5
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 6.6e-103 378.3 351 57.0
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 1.1e-102 377.5 345 60.6
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 4.3e-102 375.6 350 58.9
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 9.5e-102 374.4 304 62.8
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 2.8e-101 372.9 344 59.6
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 4.7e-101 372.1 357 57.1
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 6.2e-101 371.7 337 59.3
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 1.4e-100 370.5 348 56.0
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 4.0e-100 369.0 346 58.4
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 1.5e-99 367.1 346 56.4
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 1.5e-99 367.1 337 57.3
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 2.0e-99 366.7 336 59.2
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 2.0e-99 366.7 338 58.6
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 3.4e-99 365.9 339 57.8
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 3.4e-99 365.9 358 56.4
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 4.4e-99 365.5 331 58.9
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 7.5e-99 364.8 335 59.4
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 4.9e-98 362.1 337 57.0
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 1.1e-97 360.9 355 57.5
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 2.4e-97 359.8 338 58.6
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 3.2e-97 359.4 354 56.5
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 1.2e-96 357.5 334 59.0
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 2.7e-96 356.3 304 60.5
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 6.0e-96 355.1 333 57.7
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 7.8e-96 354.8 299 60.2
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 6.6e-95 351.7 304 59.5
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 1.9e-94 350.1 367 54.8
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 9.5e-94 347.8 311 59.2
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 2.8e-93 346.3 355 54.1
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 3.6e-93 345.9 329 57.1
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 8.1e-93 344.7 347 54.5
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 1.8e-92 343.6 300 59.0
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 8.3e-90 334.7 320 56.9
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 3.5e-88 329.3 346 52.0
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 6.6e-87 325.1 349 49.6
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 5.6e-86 322.0 305 56.1
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 9.5e-86 321.2 397 47.1
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 1.4e-84 317.4 265 60.8
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 1.4e-84 317.4 295 59.0
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 4.0e-84 315.8 329 52.6
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 7.6e-83 311.6 263 62.7
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 1.1e-81 307.8 269 61.3
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 1.9e-81 307.0 298 57.0
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 7.8e-80 301.6 298 56.4
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 7.3e-78 295.0 345 47.8
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 8.4e-74 281.6 270 55.2
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 2.7e-72 276.6 361 45.7
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 1.1e-68 264.6 300 48.3
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 3.1e-68 263.1 304 49.3
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 1.6e-56 224.2 265 50.9
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 7.6e-51 205.3 366 38.3
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 3.2e-49 199.9 244 47.1
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 3.9e-47 193.0 190 55.3
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 3.7e-45 186.4 212 49.5
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 4.5e-43 179.5 133 67.7
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 9.7e-38 161.8 184 48.9
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 4.8e-37 159.5 128 60.2
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 2.4e-36 157.1 128 60.2
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 5.3e-36 156.0 189 50.8
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 2.0e-35 154.1 128 57.8
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 2.9e-34 150.2 164 50.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.1e-33 148.3 120 65.8
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 5.2e-23 112.8 244 33.2
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 2.6e-22 110.5 87 60.9
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 7.4e-22 109.0 200 32.0
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.8e-20 104.4 87 58.6
Dinv20053 Davidia involucrata HOM05D006843 ORTHO05D008517 6.7e-15 85.9 124 40.3
Cre01.g054650 Chlamydomonas reinhardtii HOM05D006843 ORTHO05D008517 4.2e-09 66.6 100 40.0
Psat7g126680 Pisum sativum HOM05D006843 ORTHO05D008517 1.2e-08 65.1 61 59.0
ATR0926G001 Amborella trichopoda HOM05D006843 ORTHO05D008517 2.3e-07 60.8 54 57.4


User provided reference genes

Program Settings