Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.6e-233 812.4 414 100.0
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.1e-192 676.8 411 85.2
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.6e-183 644.0 391 84.7
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.6e-162 575.9 347 85.9
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.4e-155 553.5 410 69.8
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 5.3e-152 541.6 417 68.1
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 3.5e-151 538.9 437 67.5
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 2.9e-150 535.8 431 66.8
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 6.5e-150 534.6 417 68.1
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.9e-149 533.1 430 66.0
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.9e-149 533.1 421 67.2
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 2.5e-149 532.7 426 67.8
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.5e-149 531.6 417 67.4
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 9.4e-149 530.8 427 67.0
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 8.0e-148 527.7 431 65.0
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.4e-147 526.9 433 65.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.3e-147 526.2 424 66.3
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.0e-147 525.8 421 65.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 4.0e-147 525.4 419 64.7
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.2e-147 525.0 421 66.5
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 6.8e-147 524.6 419 64.2
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-146 523.9 431 65.2
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 2.0e-146 523.1 431 64.7
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.7e-146 521.5 431 64.7
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 7.5e-146 521.2 435 65.3
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 2.2e-145 519.6 435 65.5
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.3e-145 518.1 416 65.6
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.6e-143 513.5 426 62.9
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.7e-143 512.7 417 65.7
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 4.5e-143 511.9 415 63.1
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.0e-142 510.8 419 62.8
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.3e-142 510.4 417 64.3
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 2.9e-142 509.2 417 66.2
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.0e-142 508.4 417 64.3
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 5.0e-142 508.4 428 63.8
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 8.5e-142 507.7 433 64.0
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 8.5e-142 507.7 419 62.5
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.1e-141 507.3 419 62.5
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 4.2e-141 505.4 431 64.0
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 5.5e-141 505.0 433 63.5
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 7.2e-141 504.6 418 62.4
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.6e-140 503.4 418 62.7
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 2.1e-140 503.1 421 65.1
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 4.7e-140 501.9 423 62.9
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 4.7e-140 501.9 417 63.3
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 6.1e-140 501.5 415 61.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 8.0e-140 501.1 421 61.8
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.0e-140 501.1 417 64.3
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.0e-139 500.7 421 62.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.0e-139 500.7 424 63.7
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.0e-139 500.7 438 61.4
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.8e-139 497.7 417 63.8
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.0e-138 496.5 414 64.3
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.6e-138 496.1 416 64.2
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.3e-137 493.8 453 59.8
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.7e-137 493.4 420 63.6
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 3.7e-137 492.3 477 58.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 3.7e-137 492.3 427 60.4
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.1e-136 490.7 416 62.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.4e-136 489.6 419 64.2
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.6e-135 486.9 417 64.0
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 2.0e-135 486.5 416 62.5
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.7e-135 486.1 427 61.1
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 5.9e-135 485.0 420 63.1
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.0e-134 484.2 416 62.3
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 3.8e-134 482.3 429 62.5
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 3.8e-134 482.3 429 62.5
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 3.8e-134 482.3 429 62.5
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 3.8e-134 482.3 429 62.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 3.8e-134 482.3 429 62.5
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.8e-134 482.3 417 63.1
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 6.6e-134 481.5 414 63.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 8.6e-134 481.1 416 60.8
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 8.6e-134 481.1 429 62.7
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.9e-133 479.9 348 71.3
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 3.3e-133 479.2 416 60.6
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 3.3e-133 479.2 442 60.6
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 2.8e-132 476.1 429 61.8
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.8e-132 476.1 427 61.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.8e-132 476.1 427 62.3
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 2.8e-132 476.1 424 58.5
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 4.7e-132 475.3 427 62.1
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 6.1e-132 474.9 408 63.7
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.8e-131 473.4 427 62.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 8.9e-131 471.1 443 58.7
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.2e-130 470.7 427 61.4
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.5e-130 470.3 421 59.4
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.0e-130 469.9 418 60.5
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 9.8e-130 467.6 416 62.5
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.7e-129 466.8 429 61.5
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.7e-129 466.8 384 63.3
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.9e-129 466.1 415 59.5
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 6.4e-129 464.9 431 60.3
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.4e-129 464.9 418 60.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 7.0e-128 461.5 414 60.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.0e-127 459.9 452 56.4
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 2.3e-126 456.4 416 59.1
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.9e-126 455.7 413 59.1
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 9.5e-125 451.1 369 66.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.7e-124 448.7 436 58.5
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 6.2e-124 448.4 396 60.6
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 4.0e-123 445.7 416 60.1
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 5.2e-123 445.3 498 50.4
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.0e-122 443.4 382 63.9
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 6.4e-121 438.3 414 58.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 8.3e-121 438.0 418 58.6
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.1e-120 437.6 434 56.2
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.2e-119 434.1 459 54.0
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.3e-118 430.6 486 52.9
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 3.0e-118 429.5 383 61.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.3e-115 419.9 320 67.8
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 8.9e-115 417.9 441 56.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.5e-114 417.2 514 50.0
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.9e-113 412.9 397 56.7
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.9e-113 412.1 427 55.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 6.6e-110 401.7 419 55.1
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 7.3e-109 398.3 417 54.9
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.2e-108 397.5 416 53.1
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.4e-106 389.4 412 53.4
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.8e-105 386.0 411 55.7
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.4e-105 385.2 370 59.5
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.3e-102 376.7 404 53.2
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.1e-99 367.9 338 57.4
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.4e-99 366.7 391 54.5
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 3.2e-96 356.3 437 46.5
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 8.1e-92 341.7 422 46.7
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.9e-81 305.8 425 44.7
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.9e-57 226.9 215 57.7
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.2e-50 204.9 381 33.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.0e-49 201.8 422 32.7
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 7.7e-34 149.1 193 47.2
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.9e-24 117.9 84 70.2
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.9e-12 77.4 46 78.3
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.9e-12 77.4 46 78.3
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 4.1e-11 73.6 66 56.1
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 4.0e-06 57.0 125 33.6


User provided reference genes

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