Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.4e-273 945.7 473 100.0
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.7e-210 736.1 480 80.0
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 9.0e-196 687.2 441 80.5
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 4.1e-164 582.0 474 66.9
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 7.0e-156 554.7 451 67.0
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.9e-113 413.7 493 51.9
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 9.9e-110 401.4 456 52.9
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 4.9e-109 399.1 482 49.2
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 4.9e-109 399.1 456 52.6
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 5.4e-108 395.6 485 48.7
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.7e-106 390.6 459 51.4
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 4.3e-105 386.0 444 51.4
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.4e-103 380.2 445 49.2
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.7e-101 374.0 477 49.1
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.5e-99 366.3 474 47.9
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 6.0e-99 365.5 452 50.2
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.3e-98 363.6 528 44.7
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.5e-97 360.9 432 49.5
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 2.8e-96 356.7 442 49.5
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.8e-96 356.7 469 46.9
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 6.2e-96 355.5 472 46.2
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.8e-95 354.0 472 46.0
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 4.0e-95 352.8 443 48.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 7.6e-94 348.6 435 49.2
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 2.4e-92 343.6 452 45.6
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.4e-92 343.6 435 46.7
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.6e-91 340.9 497 43.5
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.7e-90 337.4 458 47.4
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.9e-90 336.3 450 48.0
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.5e-89 334.3 440 47.3
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.3e-88 331.3 451 45.5
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 6.2e-88 328.9 435 46.0
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.1e-87 328.2 440 47.5
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.1e-87 326.6 440 45.9
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 3.1e-87 326.6 478 43.5
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 9.0e-87 325.1 444 46.2
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.5e-86 324.3 476 42.9
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.9e-85 320.1 435 46.2
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.8e-85 319.7 440 46.6
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 3.2e-84 316.6 430 43.0
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 7.1e-84 315.5 430 43.3
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.9e-83 312.0 423 44.2
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 3.0e-82 310.1 429 43.4
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 4.8e-80 302.8 433 42.3
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 6.2e-80 302.4 433 43.4
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.2e-77 293.9 425 42.6
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.9e-76 290.8 457 40.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.2e-76 290.0 457 40.5
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 3.2e-76 290.0 432 41.7
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.6e-75 287.7 431 41.3
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.7e-75 287.0 432 44.9
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 6.0e-75 285.8 431 42.2
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.8e-74 284.3 435 40.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.0e-74 283.5 413 41.4
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 8.7e-74 282.0 426 43.0
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 1.9e-73 280.8 464 41.4
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 7.4e-73 278.9 471 41.8
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.3e-72 278.1 428 42.8
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 2.8e-72 276.9 437 41.0
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 3.7e-72 276.6 428 42.1
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 3.7e-72 276.6 473 41.4
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 4.8e-72 276.2 430 41.6
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.4e-71 274.6 429 39.4
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.1e-71 273.5 470 39.8
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 4.5e-70 269.6 437 38.4
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.0e-69 268.5 440 40.2
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.3e-69 268.1 428 41.1
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 8.4e-69 265.4 429 42.2
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 2.5e-68 263.8 425 41.2
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 3.2e-68 263.5 428 40.4
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 5.5e-68 262.7 428 40.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 5.5e-68 262.7 473 39.7
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.6e-67 261.2 473 38.7
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.0e-66 258.5 423 40.2
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.0e-66 258.5 423 40.2
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 5.1e-66 256.1 478 38.5
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.5e-65 254.6 558 34.9
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 7.4e-65 252.3 460 38.3
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-64 250.4 423 39.5
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.6e-62 243.8 201 59.7
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.0e-61 241.9 478 35.6
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.7e-61 241.1 427 38.9
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.8e-61 240.0 423 37.6
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 3.8e-61 240.0 425 37.4
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 6.5e-61 239.2 406 37.7
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 8.5e-61 238.8 425 37.4
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-60 237.7 403 37.5
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 3.2e-60 236.9 480 35.8
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 5.5e-60 236.1 480 33.5
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.0e-58 231.9 470 35.3
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.7e-58 229.2 423 36.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.8e-56 223.0 432 37.7
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.3e-56 222.6 409 37.7
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 4.1e-55 219.9 427 36.1
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.1e-55 218.8 364 39.3
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 5.0e-53 213.0 246 49.6
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-52 211.8 375 36.5
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 2.5e-52 210.7 192 59.4
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.1e-50 203.0 205 52.2
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 5.1e-50 203.0 196 56.1
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.1e-49 201.8 197 52.3
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 2.2e-45 187.6 156 59.6
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 4.8e-40 169.9 151 53.6
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 4.1e-39 166.8 159 59.7
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 7.0e-39 166.0 377 30.8
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.1e-35 154.5 125 61.6
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 7.0e-31 139.4 339 30.7
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 3.5e-30 137.1 162 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 5.5e-28 129.8 424 28.8
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 6.8e-26 122.9 88 71.6
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.5e-25 121.7 82 72.0
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.4e-25 120.6 117 51.3
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 8.3e-24 115.9 162 40.7
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.1e-23 115.5 326 32.8
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 4.5e-22 110.2 152 42.8
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 1.3e-21 108.6 117 51.3
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 3.6e-19 100.5 139 41.0
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 5.2e-18 96.7 77 54.5
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 7.0e-15 86.3 55 67.3
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 1.6e-14 85.1 160 33.1
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.1e-12 79.0 58 67.2


User provided reference genes

Program Settings