Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 1.5e-32 142.1 66 100.0
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 2.5e-19 98.2 53 86.8
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 5.5e-19 97.1 53 79.2
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 2.3e-17 91.7 54 77.8
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 3.0e-17 91.3 55 76.4
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 5.2e-17 90.5 53 79.2
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 2.6e-16 88.2 53 77.4
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.9e-15 84.0 53 73.6
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 1.1e-14 82.8 50 70.0
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 7.0e-14 80.1 52 67.3
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 9.2e-14 79.7 55 67.3
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 1.6e-13 79.0 55 65.5
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 2.7e-13 78.2 50 66.0
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.7e-13 78.2 49 65.3
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 2.7e-13 78.2 47 70.2
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 2.7e-13 78.2 49 65.3
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 4.5e-13 77.4 50 66.0
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 5.9e-13 77.0 52 63.5
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 7.8e-13 76.6 53 58.5
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 1.3e-12 75.9 53 62.3
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.3e-12 75.9 49 63.3
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 1.7e-12 75.5 51 64.7
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 2.3e-12 75.1 47 66.0
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.3e-12 75.1 49 65.3
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 2.9e-12 74.7 57 63.2
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 2.9e-12 74.7 55 63.6
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 2.9e-12 74.7 63 52.4
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 3.9e-12 74.3 50 62.0
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.9e-12 74.3 51 62.7
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 3.9e-12 74.3 51 62.7
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 6.6e-12 73.6 39 71.8
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 8.6e-12 73.2 47 63.8
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 8.6e-12 73.2 44 72.7
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 8.6e-12 73.2 50 62.0
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 1.1e-11 72.8 54 61.1
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 1.1e-11 72.8 50 60.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.5e-11 72.4 51 60.8
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 1.5e-11 72.4 51 60.8
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 1.9e-11 72.0 51 58.8
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 1.9e-11 72.0 51 58.8
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.9e-11 72.0 47 63.8
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.9e-11 72.0 54 61.1
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 1.9e-11 72.0 47 63.8
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 2.5e-11 71.6 48 70.8
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 3.3e-11 71.2 51 64.7
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.3e-11 71.2 43 69.8
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 4.3e-11 70.9 47 61.7
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 4.3e-11 70.9 49 61.2
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 5.6e-11 70.5 53 56.6
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 5.6e-11 70.5 35 77.1
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 7.3e-11 70.1 53 56.6
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 1.2e-10 69.3 44 68.2
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 1.6e-10 68.9 44 65.9
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 1.6e-10 68.9 35 80.0
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 1.6e-10 68.9 35 80.0
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 2.1e-10 68.6 47 61.7
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 2.8e-10 68.2 40 65.0
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 2.8e-10 68.2 49 57.1
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 2.8e-10 68.2 41 70.7
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 3.6e-10 67.8 51 60.8
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 3.6e-10 67.8 54 57.4
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.6e-10 67.8 48 60.4
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 3.6e-10 67.8 53 56.6
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 3.6e-10 67.8 53 56.6
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 3.6e-10 67.8 35 74.3
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 4.7e-10 67.4 41 68.3
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 4.7e-10 67.4 53 54.7
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 4.7e-10 67.4 43 58.1
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.7e-10 67.4 53 54.7
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 4.7e-10 67.4 53 50.9
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 6.1e-10 67.0 53 54.7
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 6.1e-10 67.0 41 63.4
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 6.1e-10 67.0 35 74.3
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 8.0e-10 66.6 44 61.4
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 8.0e-10 66.6 47 61.7
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 8.0e-10 66.6 51 56.9
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 1.0e-09 66.2 44 63.6
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.4e-09 65.9 33 75.8
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 1.4e-09 65.9 53 54.7
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 1.4e-09 65.9 48 60.4
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 1.4e-09 65.9 42 69.0
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 1.8e-09 65.5 42 69.0
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 1.8e-09 65.5 47 59.6
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.8e-09 65.5 38 65.8
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 2.3e-09 65.1 58 50.0
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 3.1e-09 64.7 40 62.5
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 3.1e-09 64.7 35 65.7
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 3.1e-09 64.7 43 60.5
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 4.0e-09 64.3 44 59.1
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 4.0e-09 64.3 38 65.8
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 4.0e-09 64.3 53 56.6
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 4.0e-09 64.3 39 64.1
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.2e-09 63.9 47 53.2
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.8e-09 63.5 41 63.4
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 6.8e-09 63.5 35 71.4
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 8.9e-09 63.2 43 55.8
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 8.9e-09 63.2 35 74.3
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 8.9e-09 63.2 39 61.5
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 8.9e-09 63.2 39 61.5
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 8.9e-09 63.2 44 52.3
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 1.2e-08 62.8 31 77.4
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 1.5e-08 62.4 48 58.3
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 1.5e-08 62.4 38 60.5
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 1.5e-08 62.4 40 62.5
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.5e-08 62.4 38 57.9
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 2.0e-08 62.0 28 85.7
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 2.0e-08 62.0 30 76.7
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 2.0e-08 62.0 44 56.8
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 3.4e-08 61.2 35 65.7
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 5.8e-08 60.5 28 82.1
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 5.8e-08 60.5 28 82.1
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 7.5e-08 60.1 40 62.5
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 9.8e-08 59.7 35 68.6
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 1.3e-07 59.3 41 58.5
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 2.4e-06 55.1 33 63.6
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 2.4e-06 55.1 33 63.6
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 3.2e-06 54.7 28 75.0


User provided reference genes

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