Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0038721 Rosa chinensis HOM05D003270 ORTHO05D003662 5.3e-93 344.4 175 100.0
RcHm_v2.0_Chr6g0249361 Rosa chinensis HOM05D003270 ORTHO05D003662 1.1e-74 283.5 181 83.4
RcHm_v2.0_Chr1g0333511 Rosa chinensis HOM05D003270 ORTHO05D003662 2.7e-73 278.9 177 84.2
RcHm_v2.0_Chr3g0456851 Rosa chinensis HOM05D003270 ORTHO05D003662 1.1e-69 266.9 176 81.8
RcHm_v2.0_Chr1g0352421 Rosa chinensis HOM05D003270 ORTHO05D003662 2.7e-65 252.3 192 75.5
FvH4_6g07220 Fragaria vesca HOM05D003270 ORTHO05D003662 1.7e-62 243.0 188 73.4
FAN05G0778 Fragaria x ananassa HOM05D003270 ORTHO05D003662 8.0e-57 224.2 187 69.0
FAN14G5384 Fragaria x ananassa HOM05D003270 ORTHO05D003662 1.2e-55 220.3 188 67.6
FAN09G4575 Fragaria x ananassa HOM05D003270 ORTHO05D003662 4.4e-55 218.4 187 66.8
RcHm_v2.0_Chr2g0129671 Rosa chinensis HOM05D003270 ORTHO05D003662 4.2e-50 201.8 126 86.5
FAN02G1275 Fragaria x ananassa HOM05D003270 ORTHO05D003662 5.2e-48 194.9 187 61.5
CsaV3_2G006930 Cucumis sativus L. HOM05D003270 ORTHO05D003662 1.8e-40 169.9 177 62.1
ClCG02G015100 Citrullus lanatus HOM05D003270 ORTHO05D003662 2.3e-40 169.5 172 61.0
Eucgr.B01665 Eucalyptus grandis HOM05D003270 ORTHO05D003662 2.3e-40 169.5 184 59.2
Cpa.g.sc48.143 Carica papaya HOM05D003270 ORTHO05D003662 2.6e-39 166.0 173 60.7
Manes.09G175500 Manihot esculenta HOM05D003270 ORTHO05D003662 2.9e-38 162.5 190 56.3
Prupe.6G315100 Prunus persica HOM05D003270 ORTHO05D003662 6.4e-38 161.4 182 53.3
Sed0010633 Sechium edule HOM05D003270 ORTHO05D003662 1.4e-37 160.2 166 57.8
PGR083G0838 Punica granatum HOM05D003270 ORTHO05D003662 3.2e-37 159.1 180 60.6
CiPaw.08G156700 Carya illinoinensis HOM05D003270 ORTHO05D003662 3.5e-36 155.6 169 60.9
QL03p018283 Quercus lobata HOM05D003270 ORTHO05D003662 1.0e-35 154.1 178 57.3
MD04G1195400 Malus domestica HOM05D003270 ORTHO05D003662 2.9e-35 152.5 187 53.5
Manes.08G112500 Manihot esculenta HOM05D003270 ORTHO05D003662 6.6e-35 151.4 182 56.6
Sabra13G0009000 Salix brachista HOM05D003270 ORTHO05D003662 1.1e-34 150.6 190 54.7
Cc02_g34800 Coffea canephora HOM05D003270 ORTHO05D003662 1.5e-34 150.2 165 57.0
COL.COLO4_04139 Corchorus olitorius HOM05D003270 ORTHO05D003662 7.3e-34 147.9 169 60.4
Duzib128G0340 Durio zibethinus HOM05D003270 ORTHO05D003662 7.3e-34 147.9 169 55.0
TWI12G1061 Tripterygium wilfordii HOM05D003270 ORTHO05D003662 1.2e-33 147.1 175 55.4
Ca_10162_v3 Cicer arietinum L. HOM05D003270 ORTHO05D003662 2.1e-33 146.4 175 54.9
VMungo0720G0293 Vigna mungo HOM05D003270 ORTHO05D003662 2.1e-33 146.4 188 52.1
Sed0024328 Sechium edule HOM05D003270 ORTHO05D003662 2.8e-33 146.0 171 56.1
Lj5g0008189 Lotus japonicus HOM05D003270 ORTHO05D003662 3.6e-33 145.6 184 54.9
CiPaw.07G027900 Carya illinoinensis HOM05D003270 ORTHO05D003662 4.7e-33 145.2 172 59.3
Glyma.20G239500 Glycine max HOM05D003270 ORTHO05D003662 4.7e-33 145.2 177 54.2
Potri.013G010400 Populus trichocarpa HOM05D003270 ORTHO05D003662 4.7e-33 145.2 193 51.3
Thecc.05G320900 Theobroma cacao HOM05D003270 ORTHO05D003662 6.2e-33 144.8 170 55.3
MD12G1207500 Malus domestica HOM05D003270 ORTHO05D003662 2.3e-32 142.9 195 49.7
Phvul.007G200400 Phaseolus vulgaris HOM05D003270 ORTHO05D003662 3.1e-32 142.5 185 53.5
Atru.chr5.1050 Acer truncatum HOM05D003270 ORTHO05D003662 6.8e-32 141.4 180 50.6
BraA07t30249Z Brassica rapa HOM05D003270 ORTHO05D003662 8.9e-32 141.0 172 51.2
Glyma.03G232100 Glycine max HOM05D003270 ORTHO05D003662 1.2e-31 140.6 166 56.0
A07p26010 Brassica napus HOM05D003270 ORTHO05D003662 1.5e-31 140.2 172 50.6
Glyma.19G229100 Glycine max HOM05D003270 ORTHO05D003662 2.0e-31 139.8 176 51.7
Dinv24423 Davidia involucrata HOM05D003270 ORTHO05D003662 2.6e-31 139.4 174 52.9
Medtr1g083860 Medicago truncatula HOM05D003270 ORTHO05D003662 4.4e-31 138.7 198 49.5
Nitab4.5_0009033g0010 Nicotiana tabacum HOM05D003270 ORTHO05D003662 4.4e-31 138.7 183 52.5
TWI75G0329 Tripterygium wilfordii HOM05D003270 ORTHO05D003662 5.8e-31 138.3 174 51.1
AT3G62630 Arabidopsis thaliana HOM05D003270 ORTHO05D003662 9.8e-31 137.5 177 48.6
C06p28310 Brassica napus HOM05D003270 ORTHO05D003662 9.8e-31 137.5 179 50.8
BolC6t38001H Brassica oleracea HOM05D003270 ORTHO05D003662 1.3e-30 137.1 176 50.6
BraA09t40862Z Brassica rapa HOM05D003270 ORTHO05D003662 1.7e-30 136.7 178 46.6
ClCG03G017710 Citrullus lanatus HOM05D003270 ORTHO05D003662 1.7e-30 136.7 185 48.1
Sabra05G0013100 Salix brachista HOM05D003270 ORTHO05D003662 2.9e-30 136.0 190 51.6
Sabra05G0025900 Salix brachista HOM05D003270 ORTHO05D003662 2.9e-30 136.0 190 51.6
A09p54490 Brassica napus HOM05D003270 ORTHO05D003662 3.7e-30 135.6 178 46.1
Nitab4.5_0000368g0280 Nicotiana tabacum HOM05D003270 ORTHO05D003662 3.7e-30 135.6 174 52.3
Actinidia21011 Actinidia chinensis HOM05D003270 ORTHO05D003662 4.9e-30 135.2 180 51.1
AL5G45380 Arabidopsis lyrata HOM05D003270 ORTHO05D003662 6.4e-30 134.8 182 48.9
Gohir.D08G223400 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.1e-29 134.0 166 54.2
BcaC07g40737 Brassica carinata HOM05D003270 ORTHO05D003662 1.4e-29 133.7 181 48.6
C08p37380 Brassica napus HOM05D003270 ORTHO05D003662 1.4e-29 133.7 181 48.6
BolC8t51316H Brassica oleracea HOM05D003270 ORTHO05D003662 1.4e-29 133.7 181 48.6
Psat0ss9276g0040 Pisum sativum HOM05D003270 ORTHO05D003662 1.4e-29 133.7 170 53.5
Haze_04081 Corylus avellana HOM05D003270 ORTHO05D003662 3.2e-29 132.5 166 53.0
Oeu053700.1 Olea europaea HOM05D003270 ORTHO05D003662 3.2e-29 132.5 177 49.2
BcaC08g45206 Brassica carinata HOM05D003270 ORTHO05D003662 4.1e-29 132.1 177 49.2
Ciclev10020563m.g Citrus clementina HOM05D003270 ORTHO05D003662 4.1e-29 132.1 190 49.5
HPP92_006895 Vanilla planifolia HOM05D003270 ORTHO05D003662 5.4e-29 131.7 163 53.4
Lalb_Chr02g0147891 Lupinus albus HOM05D003270 ORTHO05D003662 9.2e-29 131.0 177 52.5
BcaC07g40778 Brassica carinata HOM05D003270 ORTHO05D003662 1.2e-28 130.6 183 45.9
Aa31LG1G28780 Aethionema arabicum HOM05D003270 ORTHO05D003662 1.6e-28 130.2 189 47.1
VMungo1383G3394 Vigna mungo HOM05D003270 ORTHO05D003662 1.6e-28 130.2 177 50.3
BcaB02g07333 Brassica carinata HOM05D003270 ORTHO05D003662 3.5e-28 129.0 181 47.0
Glyma.10G148100 Glycine max HOM05D003270 ORTHO05D003662 4.6e-28 128.6 187 50.8
Potri.005G019600 Populus trichocarpa HOM05D003270 ORTHO05D003662 6.0e-28 128.3 192 48.4
Dinv33100 Davidia involucrata HOM05D003270 ORTHO05D003662 7.8e-28 127.9 190 45.8
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.0e-27 127.5 182 48.9
Lj1C19T9 Lonicera japonica HOM05D003270 ORTHO05D003662 1.3e-27 127.1 183 45.9
Lalb_Chr04g0260481 Lupinus albus HOM05D003270 ORTHO05D003662 1.3e-27 127.1 172 53.5
TAR362G0787 Trochodendron aralioides HOM05D003270 ORTHO05D003662 1.3e-27 127.1 200 46.0
Carub.0005s2929 Capsella rubella HOM05D003270 ORTHO05D003662 1.7e-27 126.7 186 44.1
Oeu064808.1 Olea europaea HOM05D003270 ORTHO05D003662 2.3e-27 126.3 180 48.3
TWI18G0328 Tripterygium wilfordii HOM05D003270 ORTHO05D003662 3.0e-27 125.9 177 48.6
Duzib133G0997 Durio zibethinus HOM05D003270 ORTHO05D003662 3.9e-27 125.6 174 48.9
Phvul.001G225700 Phaseolus vulgaris HOM05D003270 ORTHO05D003662 5.0e-27 125.2 160 50.0
Peaxi162Scf00673g00111 Petunia axillaris HOM05D003270 ORTHO05D003662 1.5e-26 123.6 179 49.2
Sc09g0002690 Simmondsia chinensis HOM05D003270 ORTHO05D003662 1.5e-26 123.6 185 49.2
MSTRG.27960 Avicennia marina HOM05D003270 ORTHO05D003662 7.3e-26 121.3 166 49.4
Gorai.013G128900 Gossypium raimondii HOM05D003270 ORTHO05D003662 7.3e-26 121.3 170 51.2
Gohir.A11G272200 Gossypium hirsutum HOM05D003270 ORTHO05D003662 9.5e-26 120.9 168 51.8
MBI19_g22895_MAGBIO Magnolia biondii HOM05D003270 ORTHO05D003662 9.5e-26 120.9 180 47.8
TPR.G29277 Trifolium pratense HOM05D003270 ORTHO05D003662 9.5e-26 120.9 187 47.6
Duzib177G0761 Durio zibethinus HOM05D003270 ORTHO05D003662 2.1e-25 119.8 169 49.7
Cfa006685 Carpinus fangiana HOM05D003270 ORTHO05D003662 4.7e-25 118.6 150 54.7
CsaV3_1G038290 Cucumis sativus L. HOM05D003270 ORTHO05D003662 4.7e-25 118.6 185 44.9
Gohir.A08G206700 Gossypium hirsutum HOM05D003270 ORTHO05D003662 4.7e-25 118.6 166 50.0
Gorai.004G237300 Gossypium raimondii HOM05D003270 ORTHO05D003662 4.7e-25 118.6 166 50.0
DCAR_012363 Daucus carota HOM05D003270 ORTHO05D003662 6.2e-25 118.2 173 43.4
Lj5P337T13 Lonicera japonica HOM05D003270 ORTHO05D003662 6.2e-25 118.2 181 45.9
Gohir.A13G111800 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.1e-24 117.5 170 50.0
CARHR172900 Cardamine hirsuta HOM05D003270 ORTHO05D003662 2.3e-24 116.3 187 44.4
Lsat_1_v5_gn_5_102781 Lactuca sativa HOM05D003270 ORTHO05D003662 2.3e-24 116.3 168 49.4
Sc16g0008920 Simmondsia chinensis HOM05D003270 ORTHO05D003662 4.0e-24 115.5 173 49.1
CANSAT54G2803 Cannabis sativa HOM05D003270 ORTHO05D003662 8.9e-24 114.4 172 47.1
Thhalv10006025m.g Eutrema salsugineum HOM05D003270 ORTHO05D003662 1.2e-23 114.0 185 42.7
Oeu057825.1 Olea europaea HOM05D000201 ORTHO05D001515 1.2e-23 114.0 170 49.4
Rhsim11G0093900 Rhododendron simsii HOM05D003270 ORTHO05D003662 1.5e-23 113.6 183 45.4
MSTRG.20399 Avicennia marina HOM05D003270 ORTHO05D003662 2.0e-23 113.2 177 46.3
Duzib106G1200 Durio zibethinus HOM05D003270 ORTHO05D003662 3.4e-23 112.5 177 46.3
Duzib138G1932 Durio zibethinus HOM05D003270 ORTHO05D003662 3.4e-23 112.5 175 45.1
ECA234G3267 Erigeron canadensis HOM05D003270 ORTHO05D003662 4.4e-23 112.1 177 48.6
Gohir.D11G282400 Gossypium hirsutum HOM05D003270 ORTHO05D003662 4.4e-23 112.1 140 52.9
Lj1g0001768 Lotus japonicus HOM05D003270 ORTHO05D003662 4.4e-23 112.1 170 47.1
Thecc.01G310400 Theobroma cacao HOM05D003270 ORTHO05D003662 7.5e-23 111.3 177 44.6
THA.LOC104817469 Tarenaya hassleriana HOM05D003270 ORTHO05D003662 9.8e-23 110.9 183 42.6
Gorai.007G305200 Gossypium raimondii HOM05D003270 ORTHO05D003662 1.3e-22 110.5 170 46.5
Lalb_Chr06g0167501 Lupinus albus HOM05D003270 ORTHO05D003662 1.7e-22 110.2 150 52.0
EL10Ac4g09832 Beta vulgaris HOM05D003270 ORTHO05D003662 2.2e-22 109.8 186 47.3
Ciclev10001511m.g Citrus clementina HOM05D003270 ORTHO05D003662 2.9e-22 109.4 187 43.9
Gorai.007G124400 Gossypium raimondii HOM05D003270 ORTHO05D003662 2.9e-22 109.4 162 46.3
Sp5g00880 Schrenkiella parvula HOM05D003270 ORTHO05D003662 2.9e-22 109.4 188 41.0
MSTRG.21671 Avicennia marina HOM05D003270 ORTHO05D003662 3.7e-22 109.0 171 44.4
AUR62005271 Chenopodium quinoa HOM05D003270 ORTHO05D003662 3.7e-22 109.0 162 49.4
Gohir.D11G116200 Gossypium hirsutum HOM05D003270 ORTHO05D003662 3.7e-22 109.0 162 46.3
SHI19885 Sapria himalayana HOM05D003270 ORTHO05D003662 3.7e-22 109.0 169 46.2
unitig_85.g27177 Utricularia gibba HOM05D003270 ORTHO05D003662 3.7e-22 109.0 168 45.2
HanXRQChr10g0299241 Helianthus annuus HOM05D003270 ORTHO05D003662 4.9e-22 108.6 178 43.8
TAR633G1026 Trochodendron aralioides HOM05D003270 ORTHO05D003662 4.9e-22 108.6 180 45.6
Gohir.A11G111000 Gossypium hirsutum HOM05D003270 ORTHO05D003662 6.4e-22 108.2 162 46.3
HanXRQChr03g0073781 Helianthus annuus HOM05D003270 ORTHO05D003662 6.4e-22 108.2 170 47.1
Gohir.D13G114700 Gossypium hirsutum HOM05D003270 ORTHO05D003662 1.1e-21 107.5 170 46.5
Duzib211G0334 Durio zibethinus HOM05D003270 ORTHO05D003662 1.9e-21 106.7 177 44.6
Gohir.A13G175300 Gossypium hirsutum HOM05D003270 ORTHO05D003662 5.4e-21 105.1 173 45.7
Gorai.013G206700 Gossypium raimondii HOM05D003270 ORTHO05D003662 9.2e-21 104.4 183 43.2
THA.LOC104802192 Tarenaya hassleriana HOM05D003270 ORTHO05D003662 1.2e-20 104.0 187 42.2
Cpa.g.sc18.7 Carica papaya HOM05D003270 ORTHO05D003662 1.6e-20 103.6 178 41.6
Lsat_1_v5_gn_9_122521 Lactuca sativa HOM05D003270 ORTHO05D003662 1.6e-20 103.6 188 45.2
SGA_v2.0_scaffold334G49055 Striga asiatica HOM05D003270 ORTHO05D003662 1.6e-20 103.6 172 43.6
Hma1.2p1_0008F-1.1_g005770 Hydrangea macrophylla HOM05D003270 ORTHO05D003662 2.1e-20 103.2 166 45.2
Oeu064465.1 Olea europaea HOM05D003270 ORTHO05D003662 2.1e-20 103.2 180 42.8
PGSC0003DMG400045409 Solanum tuberosum HOM05D003270 ORTHO05D003662 7.8e-20 101.3 176 41.5
Aa31LG10G16440 Aethionema arabicum HOM05D003270 ORTHO05D003662 1.0e-19 100.9 166 41.6
Gohir.D13G181200 Gossypium hirsutum HOM05D003270 ORTHO05D003662 2.3e-19 99.8 182 42.9
MBI18_g09595_MAGBIO Magnolia biondii HOM05D003270 ORTHO05D003662 5.1e-19 98.6 146 43.8
Hma1.2p1_0472F.1_g159920 Hydrangea macrophylla HOM05D003270 ORTHO05D003662 1.9e-18 96.7 167 44.3
CiPaw.08G091500 Carya illinoinensis HOM05D003270 ORTHO05D003662 3.3e-18 95.9 191 39.3
Migut.B00996 Erythranthe guttata HOM05D003270 ORTHO05D003662 3.3e-18 95.9 179 41.3
Cfa005832 Carpinus fangiana HOM05D003270 ORTHO05D003662 4.3e-18 95.5 166 39.8
SalBow2G3578 Salvia bowleyana HOM05D003270 ORTHO05D003662 4.3e-18 95.5 146 47.3
THA.LOC104825946 Tarenaya hassleriana HOM05D003270 ORTHO05D003662 1.2e-17 94.0 172 39.0
Oeu006467.1 Olea europaea HOM05D003270 ORTHO05D003662 4.7e-17 92.0 155 47.1
SEGI_37418 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 2.3e-16 89.7 173 41.6
Atru.chr2.147 Acer truncatum HOM05D003270 ORTHO05D003662 6.8e-16 88.2 196 41.8
CAN.G1273.2 Capsicum annuum HOM05D003270 ORTHO05D003662 8.9e-16 87.8 175 40.0
MELO3C015259.2 Cucumis melo HOM05D003270 ORTHO05D003662 1.5e-15 87.0 158 42.4
CDE11G0260 Ceratophyllum demersum HOM05D003270 ORTHO05D003662 4.9e-14 82.0 184 38.6
COL.COLO4_23261 Corchorus olitorius HOM05D003270 ORTHO05D003662 4.9e-14 82.0 180 36.1
Rhsim01G0289300 Rhododendron simsii HOM05D003270 ORTHO05D003662 1.1e-13 80.9 183 35.5
Dinv10073 Davidia involucrata HOM05D003270 ORTHO05D003662 7.1e-13 78.2 136 42.6
SGA_v2.0_scaffold81G26119 Striga asiatica HOM05D003270 ORTHO05D003662 1.6e-12 77.0 171 39.2
TAR365G1126 Trochodendron aralioides HOM05D003270 ORTHO05D003662 3.5e-12 75.9 180 37.8
PSO210G1568 Papaver somniferum HOM05D003270 ORTHO05D003662 4.6e-12 75.5 178 37.6
PSO761G0218 Papaver somniferum HOM05D003270 ORTHO05D003662 4.6e-12 75.5 182 36.8
Migut.D00099 Erythranthe guttata HOM05D003270 ORTHO05D003662 7.8e-12 74.7 179 36.3
Dinv30870 Davidia involucrata HOM05D003270 ORTHO05D003662 6.6e-11 71.6 106 45.3
Haze_05011 Corylus avellana HOM05D003270 ORTHO05D003662 8.6e-11 71.2 159 35.8
vmacro01553 Vaccinium macrocarpon HOM05D003270 ORTHO05D003662 8.6e-11 71.2 180 33.9
ATR0706G204 Amborella trichopoda HOM05D003270 ORTHO05D003662 1.1e-10 70.9 168 36.3
CDE05G1863 Ceratophyllum demersum HOM05D003270 ORTHO05D003662 1.9e-10 70.1 191 35.1
Lju1295C4T4 Lonicera japonica HOM05D003270 ORTHO05D003662 4.3e-10 68.9 138 39.9
Aqoxy2G02803 Aquilegia oxysepala HOM05D003270 ORTHO05D003662 1.2e-09 67.4 193 35.8
SEGI_18254 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 1.2e-09 67.4 170 36.5
Nn2g14322 Nelumbo nucifera HOM05D003270 ORTHO05D003662 4.7e-09 65.5 175 33.1
Os03g0303100 Oryza sativa ssp. japonica HOM05D003270 ORTHO05D003662 5.2e-08 62.0 160 38.8
Sopen01g043820 Solanum pennellii HOM05D003270 ORTHO05D003662 5.2e-08 62.0 170 34.7
Solyc01g100310.2 Solanum lycopersicum HOM05D003270 ORTHO05D003662 1.2e-07 60.8 170 34.7
SalBow8G3220 Salvia bowleyana HOM05D003270 ORTHO05D003662 3.4e-07 59.3 72 50.0
MELO3C004199.2 Cucumis melo HOM05D003270 ORTHO05D003662 5.8e-07 58.5 41 75.6
Aqoxy6G02451 Aquilegia oxysepala HOM05D003270 ORTHO05D003662 9.9e-07 57.8 177 33.9
Zm00001eb014250 Zea mays HOM05D003270 ORTHO05D003662 1.7e-06 57.0 156 37.2
SalBow6G5933 Salvia bowleyana HOM05D003270 ORTHO05D003662 2.9e-06 56.2 72 47.2


User provided reference genes

Program Settings