Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0038091 Rosa chinensis HOM05D000371 ORTHO05D006340 3.1e-30 134.4 65 100.0
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 6.3e-15 83.6 41 92.7
Nn1g05528 Nelumbo nucifera HOM05D000371 ORTHO05D006340 3.1e-14 81.3 42 85.7
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.1e-14 80.9 41 90.2
CSS0029316 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006340 5.3e-14 80.5 40 90.0
CANSAT11G2503 Cannabis sativa HOM05D000371 ORTHO05D006340 5.3e-14 80.5 42 85.7
MELO3C018596.2 Cucumis melo HOM05D000371 ORTHO05D006340 5.3e-14 80.5 40 90.0
CsaV3_7G006970 Cucumis sativus L. HOM05D000371 ORTHO05D006340 5.3e-14 80.5 40 90.0
TAR625G1317 Trochodendron aralioides HOM05D000371 ORTHO05D006340 5.3e-14 80.5 40 90.0
THA.LOC104799807 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 9.0e-14 79.7 41 85.4
Cc02_g21010 Coffea canephora HOM05D000371 ORTHO05D006340 1.2e-13 79.3 42 85.7
Actinidia01164 Actinidia chinensis HOM05D000371 ORTHO05D006340 1.5e-13 79.0 40 85.0
Dinv15989 Davidia involucrata HOM05D000371 ORTHO05D006340 1.5e-13 79.0 40 87.5
AagrBONN_evm.TU.Sc2ySwM_344.182 Anthoceros agrestis HOM05D000371 ORTHO05D006340 2.0e-13 78.6 41 85.4
Aqoxy1G01043 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 2.6e-13 78.2 43 74.4
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 3.4e-13 77.8 40 87.5
GSVIVG01015733001 Vitis vinifera HOM05D000371 ORTHO05D006340 3.4e-13 77.8 40 85.0
ClCG09G015820 Citrullus lanatus HOM05D000371 ORTHO05D006340 4.5e-13 77.4 40 87.5
Hma1.2p1_1093F.1_g256100 Hydrangea macrophylla HOM05D000371 ORTHO05D006340 4.5e-13 77.4 41 82.9
Sed0020537 Sechium edule HOM05D000371 ORTHO05D006340 4.5e-13 77.4 40 87.5
TAR381G1119 Trochodendron aralioides HOM05D000371 ORTHO05D006340 4.5e-13 77.4 40 85.0
BolC3t18453H Brassica oleracea HOM05D000371 ORTHO05D006340 5.9e-13 77.0 42 81.0
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 5.9e-13 77.0 42 83.3
SGA_v2.0_scaffold83G26354 Striga asiatica HOM05D000371 ORTHO05D006340 5.9e-13 77.0 40 85.0
THA.LOC104818449 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 1.0e-12 76.3 40 85.0
Cfa005697 Carpinus fangiana HOM05D000371 ORTHO05D006340 1.3e-12 75.9 40 85.0
Haze_10551 Corylus avellana HOM05D000371 ORTHO05D006340 1.3e-12 75.9 40 85.0
FvH4_2g11800 Fragaria vesca HOM05D000371 ORTHO05D006340 1.3e-12 75.9 40 85.0
FAN15G0960 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.3e-12 75.9 40 85.0
SGA_v2.0_scaffold14G07147 Striga asiatica HOM05D000371 ORTHO05D006340 1.3e-12 75.9 40 85.0
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.7e-12 75.5 42 78.6
Hund23433 Selenicereus undatus HOM05D000371 ORTHO05D006340 1.7e-12 75.5 42 83.3
Hund23435 Selenicereus undatus HOM05D000371 ORTHO05D006340 1.7e-12 75.5 42 83.3
Sc08g0003840 Simmondsia chinensis HOM05D000371 ORTHO05D006340 1.7e-12 75.5 40 85.0
Aa31LG3G17510 Aethionema arabicum HOM05D000371 ORTHO05D006340 2.2e-12 75.1 40 80.0
Duzib132G1081 Durio zibethinus HOM05D000371 ORTHO05D006340 2.2e-12 75.1 40 82.5
ECA232G0442 Erigeron canadensis HOM05D000371 ORTHO05D006340 2.2e-12 75.1 41 80.5
Migut.B00563 Erythranthe guttata HOM05D000371 ORTHO05D006340 2.2e-12 75.1 40 82.5
Lsat_1_v5_gn_9_41400 Lactuca sativa HOM05D000371 ORTHO05D006340 2.2e-12 75.1 41 80.5
MBI02_g19395_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006340 2.2e-12 75.1 40 82.5
Os02g0760300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006340 2.2e-12 75.1 40 82.5
Zm00001eb255600 Zea mays HOM05D000371 ORTHO05D006340 2.2e-12 75.1 40 82.5
Aqoxy5G01319 Aquilegia oxysepala HOM05D000371 ORTHO05D006340 2.9e-12 74.7 40 77.5
CiPaw.05G030900 Carya illinoinensis HOM05D000371 ORTHO05D006340 2.9e-12 74.7 40 82.5
Eucgr.I02629 Eucalyptus grandis HOM05D000371 ORTHO05D006340 2.9e-12 74.7 40 82.5
Medtr2g009390 Medicago truncatula HOM05D000371 ORTHO05D006340 2.9e-12 74.7 40 82.5
TWI14G0489 Tripterygium wilfordii HOM05D000371 ORTHO05D006340 2.9e-12 74.7 40 82.5
MSTRG.27813 Avicennia marina HOM05D000371 ORTHO05D006340 3.8e-12 74.3 40 85.0
BcaC04g23321 Brassica carinata HOM05D000371 ORTHO05D006340 3.8e-12 74.3 42 78.6
Haze_04579 Corylus avellana HOM05D000371 ORTHO05D006340 3.8e-12 74.3 38 86.8
FAN20G0951 Fragaria x ananassa HOM05D000371 ORTHO05D006340 3.8e-12 74.3 40 82.5
MD04G1047400 Malus domestica HOM05D000371 ORTHO05D006340 3.8e-12 74.3 40 82.5
Manes.07G036800 Manihot esculenta HOM05D000371 ORTHO05D006340 3.8e-12 74.3 40 82.5
PSO675G2104 Papaver somniferum HOM05D007460 ORTHO05D009396 3.8e-12 74.3 42 73.8
TPR.G9488 Trifolium pratense HOM05D000371 ORTHO05D006340 3.8e-12 74.3 40 80.0
VMungo0540G0136 Vigna mungo HOM05D000371 ORTHO05D006340 3.8e-12 74.3 42 78.6
AL8G41710 Arabidopsis lyrata HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
BcaC03g18259 Brassica carinata HOM05D000160 ORTHO05D001344 5.0e-12 73.9 42 78.6
A09p08640 Brassica napus HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
C02p63310 Brassica napus HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
C09p09750 Brassica napus HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
BolC2t12401H Brassica oleracea HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
BolC9t53886H Brassica oleracea HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
CAN.G523.27 Capsicum annuum HOM05D000371 ORTHO05D006340 5.0e-12 73.9 40 82.5
CARHR278290 Cardamine hirsuta HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
DCAR_004188 Daucus carota HOM05D000371 ORTHO05D006340 5.0e-12 73.9 41 78.0
Thhalv10005167m.g Eutrema salsugineum HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 76.2
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 76.2
HanXRQChr15g0491901 Helianthus annuus HOM05D000371 ORTHO05D006340 5.0e-12 73.9 41 80.5
Sp2g27420 Schrenkiella parvula HOM05D000371 ORTHO05D006340 5.0e-12 73.9 42 78.6
Solyc01g105710.3 Solanum lycopersicum HOM05D000371 ORTHO05D006340 5.0e-12 73.9 40 82.5
Sopen01g048150 Solanum pennellii HOM05D000371 ORTHO05D006340 5.0e-12 73.9 40 82.5
PGSC0003DMG400033579 Solanum tuberosum HOM05D000371 ORTHO05D006340 5.0e-12 73.9 40 82.5
unitig_62.g23629 Utricularia gibba HOM05D000371 ORTHO05D006340 5.0e-12 73.9 41 80.5
arahy.Tifrunner.gnm1.ann1.ASG1PZ Arachis hypogaea HOM05D000371 ORTHO05D006340 6.5e-12 73.6 40 82.5
arahy.Tifrunner.gnm1.ann1.WN06RC Arachis hypogaea HOM05D000371 ORTHO05D006340 6.5e-12 73.6 40 82.5
A06p31020 Brassica napus HOM05D000371 ORTHO05D006340 6.5e-12 73.6 42 76.2
BraA06t26044Z Brassica rapa HOM05D000371 ORTHO05D006340 6.5e-12 73.6 42 76.2
AUR62012896 Chenopodium quinoa HOM05D000371 ORTHO05D006340 6.5e-12 73.6 40 82.5
AUR62027120 Chenopodium quinoa HOM05D000371 ORTHO05D006340 6.5e-12 73.6 40 82.5
COL.COLO4_32358 Corchorus olitorius HOM05D000371 ORTHO05D006340 6.5e-12 73.6 40 82.5
Migut.N01091 Erythranthe guttata HOM05D000371 ORTHO05D006340 6.5e-12 73.6 40 82.5
QL11p023863 Quercus lobata HOM05D000371 ORTHO05D006340 6.5e-12 73.6 41 80.5
Sabra07G0092400 Salix brachista HOM05D000371 ORTHO05D006340 6.5e-12 73.6 42 78.6
SalBow6G0133 Salvia bowleyana HOM05D000371 ORTHO05D006340 6.5e-12 73.6 42 73.8
SalBow6G1985 Salvia bowleyana HOM05D000371 ORTHO05D006340 6.5e-12 73.6 42 73.8
Ca_00157_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006340 8.4e-12 73.2 40 80.0
Lj6g0013164 Lotus japonicus HOM05D000371 ORTHO05D006340 8.4e-12 73.2 40 82.5
PSO541G5676 Papaver somniferum HOM05D007460 ORTHO05D009396 8.4e-12 73.2 42 69.0
Phvul.006G203300 Phaseolus vulgaris HOM05D000371 ORTHO05D006340 8.4e-12 73.2 40 80.0
PGR142G0954 Punica granatum HOM05D000371 ORTHO05D006340 8.4e-12 73.2 40 82.5
SMO365G0026 Selaginella moellendorffii HOM05D000371 ORTHO05D006340 8.4e-12 73.2 43 72.1
Thecc.02G131800 Theobroma cacao HOM05D000371 ORTHO05D006340 8.4e-12 73.2 40 82.5
BraA09t36513Z Brassica rapa HOM05D000371 ORTHO05D006340 1.4e-11 72.4 42 76.2
Nitab4.5_0001264g0200 Nicotiana tabacum HOM05D000371 ORTHO05D006340 1.4e-11 72.4 40 82.5
Nitab4.5_0002650g0070 Nicotiana tabacum HOM05D000371 ORTHO05D006340 1.4e-11 72.4 40 82.5
Potri.007G113100 Populus trichocarpa HOM05D000371 ORTHO05D006340 1.4e-11 72.4 40 80.0
MSTRG.5277 Avicennia marina HOM05D000371 ORTHO05D006340 1.9e-11 72.0 42 81.0
Ciclev10006261m.g Citrus clementina HOM05D000371 ORTHO05D006340 1.9e-11 72.0 42 76.2
Glyma.13G258500 Glycine max HOM05D000371 ORTHO05D006340 1.9e-11 72.0 40 77.5
Lalb_Chr18g0060451 Lupinus albus HOM05D000371 ORTHO05D006340 1.9e-11 72.0 40 77.5
Peaxi162Scf00299g00847 Petunia axillaris HOM05D000371 ORTHO05D006340 1.9e-11 72.0 40 82.5
RhsimUnG0008400 Rhododendron simsii HOM05D000371 ORTHO05D006340 1.9e-11 72.0 40 82.5
RhsimUnG0106200 Rhododendron simsii HOM05D000371 ORTHO05D006340 1.9e-11 72.0 40 82.5
Glyma.15G056800 Glycine max HOM05D000371 ORTHO05D006340 2.5e-11 71.6 40 77.5
Mapoly0091s0066 Marchantia polymorpha HOM05D000371 ORTHO05D006340 2.5e-11 71.6 42 73.8
PSO541G0529 Papaver somniferum HOM05D000371 ORTHO05D006340 2.5e-11 71.6 42 76.2
PSO675G6035 Papaver somniferum HOM05D000371 ORTHO05D006340 2.5e-11 71.6 42 76.2
Gohir.A03G176100 Gossypium hirsutum HOM05D000371 ORTHO05D006340 3.2e-11 71.2 40 80.0
Gohir.D02G199900 Gossypium hirsutum HOM05D000371 ORTHO05D006340 3.2e-11 71.2 40 80.0
Gorai.005G224600 Gossypium raimondii HOM05D000371 ORTHO05D006340 3.2e-11 71.2 40 80.0
Prupe.8G067900 Prunus persica HOM05D000371 ORTHO05D006340 3.2e-11 71.2 40 80.0
RcHm_v2.0_Chr6g0249601 Rosa chinensis HOM05D000371 ORTHO05D006340 3.2e-11 71.2 40 80.0
AT5G64350 Arabidopsis thaliana HOM05D000371 ORTHO05D006340 4.2e-11 70.9 42 76.2
BcaB07g29739 Brassica carinata HOM05D000371 ORTHO05D006340 4.2e-11 70.9 42 76.2
Carub.0008s2515 Capsella rubella HOM05D000371 ORTHO05D006340 4.2e-11 70.9 42 76.2
Pp3c1_27870 Physcomitrium patens HOM05D000371 ORTHO05D006340 4.2e-11 70.9 40 75.0
Atru.BG.32.p Acer truncatum HOM05D000371 ORTHO05D006340 5.5e-11 70.5 40 77.5
ATR0022G017 Amborella trichopoda HOM05D000371 ORTHO05D006340 7.2e-11 70.1 40 77.5
SalBow8G3269 Salvia bowleyana HOM05D000371 ORTHO05D006340 7.2e-11 70.1 42 76.2
FAN21G0724 Fragaria x ananassa HOM05D000371 ORTHO05D006340 9.3e-11 69.7 39 79.5
Mapoly0147s0023 Marchantia polymorpha HOM05D001298 ORTHO05D006340 9.3e-11 69.7 42 69.0
vmacro01851 Vaccinium macrocarpon HOM05D000371 ORTHO05D006340 1.2e-10 69.3 40 77.5
EL10Ac9g22085 Beta vulgaris HOM05D000371 ORTHO05D006340 1.6e-10 68.9 42 76.2
CBR_g19026 Chara braunii HOM05D000371 ORTHO05D006340 1.6e-10 68.9 42 73.8
Actinidia00294 Actinidia chinensis HOM05D000371 ORTHO05D006340 3.5e-10 67.8 42 73.8
PRCOL_00001212 Prasinoderma coloniale HOM05D000371 ORTHO05D006340 1.0e-09 66.2 40 72.5
C03p61940 Brassica napus HOM05D000371 ORTHO05D006340 5.7e-08 60.5 34 76.5
ECA232G5016 Erigeron canadensis HOM05D000371 ORTHO05D006340 2.2e-07 58.5 45 55.6
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 6.3e-07 57.0 33 75.8
SalBow8G3846 Salvia bowleyana HOM05D000371 ORTHO05D006340 2.4e-06 55.1 37 64.9
MCO15G095 Micromonas commoda HOM05D000371 ORTHO05D006340 6.9e-06 53.5 42 61.9


User provided reference genes

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