Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 9.8e-242 839.7 429 100.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.9e-219 763.8 431 90.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.5e-218 762.7 431 90.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.8e-217 758.1 431 89.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.1e-216 753.8 431 89.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.8e-172 609.0 439 72.9
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 8.5e-161 570.9 446 68.4
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 7.7e-146 521.2 444 64.0
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 8.6e-121 438.0 483 54.5
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.1e-118 431.0 483 53.6
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.7e-116 422.5 483 53.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.7e-114 416.4 481 53.0
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.5e-114 416.0 490 52.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.3e-113 413.3 506 51.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 5.1e-113 412.1 478 51.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.3e-112 409.1 508 50.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 4.7e-111 405.6 499 49.5
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 4.7e-111 405.6 511 50.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.8e-110 403.7 469 51.0
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.0e-109 400.2 491 51.5
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.4e-109 399.4 476 50.0
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.2e-108 396.7 478 49.6
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.9e-108 396.4 478 49.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.4e-108 395.2 478 49.4
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 8.4e-108 394.8 481 48.9
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.9e-107 393.7 468 50.9
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 9.2e-107 391.3 478 48.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.6e-106 390.6 478 49.6
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 2.1e-106 390.2 464 51.3
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.7e-106 389.8 528 46.6
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.6e-106 389.0 482 48.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.0e-105 387.9 477 48.6
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.0e-105 387.9 467 49.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 3.0e-105 386.3 478 49.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 3.9e-105 386.0 488 49.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 6.6e-105 385.2 471 50.7
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.5e-104 384.0 485 50.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.8e-103 379.0 471 50.3
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 4.8e-103 379.0 478 47.5
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.4e-102 377.5 505 45.7
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.8e-102 377.1 475 48.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.9e-102 375.2 467 48.6
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.0e-101 373.6 475 47.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.4e-101 372.9 475 47.2
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 4.4e-101 372.5 464 48.3
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 9.9e-101 371.3 479 47.4
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 9.9e-101 371.3 476 47.9
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.3e-100 370.9 502 47.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.7e-100 370.5 473 44.8
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.9e-100 369.8 464 46.3
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.4e-99 367.5 541 45.1
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.6e-98 364.0 438 50.0
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.7e-98 363.2 463 45.8
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.7e-98 363.2 463 45.8
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 3.5e-98 362.8 468 47.0
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.6e-98 362.5 462 46.5
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 6.0e-98 362.1 450 48.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.0e-97 361.3 477 46.1
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.0e-97 359.8 487 47.0
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 5.1e-97 359.0 476 48.5
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 5.1e-97 359.0 513 44.8
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.1e-96 357.8 480 45.0
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.5e-96 356.7 490 46.9
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.3e-96 356.3 441 51.0
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.3e-96 356.3 492 48.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.8e-95 353.2 475 47.4
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.8e-95 353.2 449 49.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.8e-95 352.4 493 47.3
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.1e-94 351.3 473 48.6
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.4e-94 350.1 494 46.4
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.1e-94 349.7 498 47.2
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 9.0e-94 348.2 499 47.3
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 9.0e-94 348.2 494 46.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.5e-93 347.4 438 49.5
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 4.5e-93 345.9 453 48.8
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.6e-93 345.1 481 46.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.9e-93 344.7 485 46.4
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.2e-92 343.6 525 43.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.2e-92 343.6 525 43.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 8.4e-92 341.7 398 51.8
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.1e-90 337.0 479 45.9
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-90 337.0 422 48.3
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 6.0e-90 335.5 475 45.1
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.0e-89 333.2 477 45.5
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 6.7e-89 332.0 394 50.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 6.7e-89 332.0 394 50.0
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.3e-87 327.8 395 49.6
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.8e-87 325.9 478 43.9
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.1e-86 324.7 527 41.2
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.8e-86 323.9 438 47.3
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.0e-86 322.8 409 49.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 5.3e-86 322.4 519 40.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-85 321.2 522 40.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.5e-85 320.9 465 46.2
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.5e-83 313.5 433 44.8
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.5e-83 313.5 463 44.5
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 9.3e-83 311.6 401 47.6
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.6e-82 310.8 459 42.0
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.1e-82 310.5 450 44.7
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.5e-82 309.7 437 45.3
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 6.0e-82 308.9 482 43.4
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.3e-81 307.0 434 45.6
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 2.5e-80 303.5 365 46.8
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 7.4e-80 302.0 442 43.7
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-77 294.3 432 43.8
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 5.8e-77 292.4 340 50.0
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.1e-74 283.9 442 41.4
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.7e-74 283.5 436 42.0
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 5.0e-68 262.7 555 35.3
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 2.1e-66 257.3 452 40.5
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.3e-65 253.8 443 39.1
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.1e-64 251.5 391 43.5
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-63 248.1 330 45.5
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.8e-62 244.2 456 38.2
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.3e-62 242.7 402 40.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 6.9e-62 242.3 378 42.3
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.5e-59 233.8 450 37.3
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.2e-59 233.0 332 42.5
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 6.1e-58 229.2 340 43.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.1e-54 218.4 454 35.9
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.2e-50 204.9 396 37.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.3e-48 196.8 211 55.5
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 2.0e-45 187.6 205 56.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 2.0e-45 187.6 734 26.8
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.8e-44 183.3 212 52.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.6e-40 170.6 207 49.3
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.8e-38 164.5 349 35.8
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.1e-38 163.3 389 36.2
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.8e-36 156.8 210 45.2
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.6e-34 151.4 212 45.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.5e-29 133.7 387 29.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 5.0e-28 129.8 673 25.4
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.0e-24 117.9 202 38.6
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 4.9e-23 113.2 551 24.0
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 8.3e-23 112.5 552 23.7
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.4e-22 111.7 212 34.9
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 6.6e-20 102.8 202 35.6
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 3.3e-19 100.5 174 40.2
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 5.6e-19 99.8 140 41.4
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.8e-18 97.4 206 35.9
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 5.2e-17 93.2 110 42.7
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 8.9e-17 92.4 405 24.9
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 8.9e-17 92.4 114 44.7
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.5e-16 91.7 136 45.6
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.6e-16 90.9 210 34.3
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-15 87.8 87 51.7
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 9.2e-14 82.4 243 30.5
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.2e-13 82.0 213 28.2
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 2.7e-13 80.9 562 21.5
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.0e-12 79.0 164 34.1
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.5e-11 74.3 225 29.8
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.6e-10 71.6 102 47.1
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.1e-10 71.2 159 30.2
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.6e-08 64.3 148 35.8
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 4.9e-07 60.1 129 45.0
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.9e-06 58.2 73 39.7
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 1.9e-06 58.2 116 41.4
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 9.2e-06 55.8 114 31.6
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 9.2e-06 55.8 46 52.2


User provided reference genes

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