Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0037801 Rosa chinensis HOM05D006334 ORTHO05D008320 3.5e-137 491.9 301 100.0
FvH4_3g21950 Fragaria vesca HOM05D006334 ORTHO05D008320 5.3e-117 424.9 301 86.7
FAN11G3716 Fragaria x ananassa HOM05D006334 ORTHO05D008320 4.2e-114 415.2 301 84.7
FAN25G1013 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.7e-110 403.3 301 85.7
Dinv22296 Davidia involucrata HOM05D006334 ORTHO05D008320 1.7e-94 350.1 298 72.1
MD03G1210000 Malus domestica HOM05D006334 ORTHO05D008320 1.8e-93 346.7 301 73.8
MD11G1224700 Malus domestica HOM05D006334 ORTHO05D008320 3.1e-93 345.9 301 76.7
Prupe.4G205200 Prunus persica HOM05D006334 ORTHO05D008320 5.0e-91 338.6 301 72.4
Potri.001G418900 Populus trichocarpa HOM05D006334 ORTHO05D008320 8.5e-91 337.8 302 66.9
CSS0039549 Camellia sinensis var. sinensis HOM05D006334 ORTHO05D008320 3.2e-90 335.9 303 73.3
FAN21G3458 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.4e-88 330.5 308 72.4
CiPaw.12G127100 Carya illinoinensis HOM05D006334 ORTHO05D008320 4.8e-86 322.0 301 70.4
HanXRQChr11g0337741 Helianthus annuus HOM05D006334 ORTHO05D008320 8.2e-86 321.2 291 72.9
Haze_09629 Corylus avellana HOM05D006334 ORTHO05D008320 4.1e-85 318.9 301 68.1
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 1.0e-83 314.3 298 67.8
Ah.04g165560 Amaranthus hybridus HOM05D006334 ORTHO05D008320 5.5e-82 308.5 304 64.1
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 3.6e-81 305.8 298 67.4
DCAR_022532 Daucus carota HOM05D006334 ORTHO05D008320 3.6e-81 305.8 303 64.4
Manes.03G123900 Manihot esculenta HOM05D006334 ORTHO05D008320 3.6e-81 305.8 301 68.1
AUR62020535 Chenopodium quinoa HOM05D006334 ORTHO05D008320 6.8e-80 301.6 301 64.5
ECA236G0521 Erigeron canadensis HOM05D006334 ORTHO05D008320 2.6e-79 299.7 300 68.7
Hund23297 Selenicereus undatus HOM05D006334 ORTHO05D008320 4.4e-79 298.9 301 68.1
RhsimUnG0252800 Rhododendron simsii HOM05D006334 ORTHO05D008320 7.5e-79 298.1 410 52.0
ClCG05G014700 Citrullus lanatus HOM05D006334 ORTHO05D008320 9.8e-79 297.7 295 66.1
Sabra16G0284400 Salix brachista HOM05D006334 ORTHO05D008320 9.8e-79 297.7 302 67.2
GSVIVG01001978001 Vitis vinifera HOM05D006334 ORTHO05D008320 2.2e-78 296.6 301 66.1
QL08p012879 Quercus lobata HOM05D006334 ORTHO05D008320 2.8e-78 296.2 300 66.0
Lsat_1_v5_gn_7_109541 Lactuca sativa HOM05D006334 ORTHO05D008320 4.8e-78 295.4 301 64.5
Atru.chr2.3229 Acer truncatum HOM05D006334 ORTHO05D008320 1.8e-77 293.5 302 65.2
TWI38G1766 Tripterygium wilfordii HOM05D006334 ORTHO05D008320 5.4e-77 292.0 302 64.6
MBI02_g23962_MAGBIO Magnolia biondii HOM05D006334 ORTHO05D008320 4.5e-76 288.9 301 68.1
AUR62015668 Chenopodium quinoa HOM05D006334 ORTHO05D008320 7.7e-76 288.1 301 59.5
PSO210G7302 Papaver somniferum HOM05D006334 ORTHO05D008320 2.3e-75 286.6 291 66.7
Lj8A166G85 Lonicera japonica HOM05D006334 ORTHO05D008320 3.8e-75 285.8 314 62.4
COL.COLO4_09585 Corchorus olitorius HOM05D006334 ORTHO05D008320 5.0e-75 285.4 301 65.8
vmacro09744 Vaccinium macrocarpon HOM05D006334 ORTHO05D008320 1.5e-74 283.9 312 63.1
PSO832G3755 Papaver somniferum HOM05D006334 ORTHO05D008320 9.5e-74 281.2 291 65.6
Gorai.002G083500 Gossypium raimondii HOM05D006334 ORTHO05D008320 4.7e-73 278.9 301 66.1
Gohir.D01G062800 Gossypium hirsutum HOM05D006334 ORTHO05D008320 6.1e-73 278.5 301 64.1
AUR62005409 Chenopodium quinoa HOM05D006334 ORTHO05D008320 1.0e-72 277.7 299 62.5
arahy.Tifrunner.gnm1.ann1.Q0MPW2 Arachis hypogaea HOM05D006334 ORTHO05D008320 1.4e-72 277.3 302 62.9
arahy.Tifrunner.gnm1.ann1.9AY9GA Arachis hypogaea HOM05D006334 ORTHO05D008320 1.8e-72 276.9 302 63.2
Duzib268G1565 Durio zibethinus HOM05D006334 ORTHO05D008320 2.3e-72 276.6 311 62.4
Thecc.07G050800 Theobroma cacao HOM05D006334 ORTHO05D008320 2.3e-72 276.6 298 67.4
Sc07g0002760 Simmondsia chinensis HOM05D006334 ORTHO05D008320 4.0e-72 275.8 312 61.5
Ciclev10009059m.g Citrus clementina HOM05D006334 ORTHO05D008320 8.9e-72 274.6 301 63.8
CAN.G1110.6 Capsicum annuum HOM05D006334 ORTHO05D008320 7.5e-71 271.6 296 62.5
Nitab4.5_0002229g0170 Nicotiana tabacum HOM05D006334 ORTHO05D008320 7.5e-71 271.6 308 59.4
Gohir.A01G075500 Gossypium hirsutum HOM05D006334 ORTHO05D008320 1.7e-70 270.4 301 62.5
Nitab4.5_0002342g0070 Nicotiana tabacum HOM05D006334 ORTHO05D008320 2.2e-70 270.0 307 59.3
QL08p012752 Quercus lobata HOM05D006334 ORTHO05D008320 8.3e-70 268.1 183 80.9
CsaV3_3G023200 Cucumis sativus L. HOM05D006334 ORTHO05D008320 1.4e-69 267.3 312 60.6
CsaV3_UNG104770 Cucumis sativus L. HOM05D006334 ORTHO05D008320 1.4e-69 267.3 312 60.6
MELO3C018091.2 Cucumis melo HOM05D006334 ORTHO05D008320 3.1e-69 266.2 312 60.3
CARHR234770 Cardamine hirsuta HOM05D006334 ORTHO05D008320 4.1e-69 265.8 303 64.0
Eucgr.F03434 Eucalyptus grandis HOM05D006334 ORTHO05D008320 5.4e-69 265.4 302 60.9
Phvul.005G092400 Phaseolus vulgaris HOM05D006334 ORTHO05D008320 7.0e-69 265.0 301 60.8
AL7G25680 Arabidopsis lyrata HOM05D006334 ORTHO05D008320 1.2e-68 264.2 306 63.4
Nn1g07058 Nelumbo nucifera HOM05D006334 ORTHO05D008320 2.9e-67 259.6 301 65.1
Peaxi162Scf00450g00858 Petunia axillaris HOM05D006334 ORTHO05D008320 6.6e-67 258.5 315 62.5
Aqoxy1G03666 Aquilegia oxysepala HOM05D006334 ORTHO05D008320 3.3e-66 256.1 226 72.1
Lj3g0002745 Lotus japonicus HOM05D006334 ORTHO05D008320 4.3e-66 255.8 301 59.1
THA.LOC104812531 Tarenaya hassleriana HOM05D006334 ORTHO05D008320 5.6e-66 255.4 310 60.0
TAR629G3436 Trochodendron aralioides HOM05D006334 ORTHO05D008320 5.6e-66 255.4 301 64.1
Psat5g251960 Pisum sativum HOM05D006334 ORTHO05D008320 7.3e-66 255.0 301 61.5
Peaxi162Scf00407g00312 Petunia axillaris HOM05D006334 ORTHO05D008320 2.8e-65 253.1 296 60.8
PGSC0003DMG400014399 Solanum tuberosum HOM05D006334 ORTHO05D008320 1.2e-63 247.7 296 61.8
Aa31LG5G10300 Aethionema arabicum HOM05D006334 ORTHO05D008320 2.0e-63 246.9 313 58.8
Zm00001eb298180 Zea mays HOM05D006334 ORTHO05D008320 2.2e-62 243.4 193 70.5
CDE05G3377 Ceratophyllum demersum HOM05D006334 ORTHO05D008320 2.9e-62 243.0 297 54.2
AT4G27120 Arabidopsis thaliana HOM05D006334 ORTHO05D008320 6.4e-62 241.9 303 59.4
Carub.0007s1372 Capsella rubella HOM05D006334 ORTHO05D008320 6.4e-62 241.9 303 62.7
Cc05_g13330 Coffea canephora HOM05D006334 ORTHO05D008320 6.4e-62 241.9 303 57.8
PGR031G1291 Punica granatum HOM05D006334 ORTHO05D008320 1.9e-61 240.4 307 59.0
Medtr2g083200 Medicago truncatula HOM05D006334 ORTHO05D008320 1.6e-60 237.3 307 56.0
EL10Ac4g07940 Beta vulgaris HOM05D006334 ORTHO05D008320 2.7e-60 236.5 312 57.7
Thhalv10025846m.g Eutrema salsugineum HOM05D006334 ORTHO05D008320 3.5e-60 236.1 303 61.7
Sp7g25090 Schrenkiella parvula HOM05D006334 ORTHO05D008320 7.8e-60 235.0 303 62.4
Solyc10g006460.3 Solanum lycopersicum HOM05D006334 ORTHO05D008320 3.0e-59 233.0 181 70.2
VMungo1080G0184 Vigna mungo HOM05D006334 ORTHO05D008320 3.9e-59 232.6 313 54.6
Os07g0103200 Oryza sativa ssp. japonica HOM05D006334 ORTHO05D008320 6.6e-59 231.9 299 56.2
Sopen10g002410 Solanum pennellii HOM05D006334 ORTHO05D008320 2.5e-58 229.9 138 84.1
Ca_01740_v3 Cicer arietinum L. HOM05D006334 ORTHO05D008320 7.3e-58 228.4 301 55.8
HPP92_014117 Vanilla planifolia HOM05D006334 ORTHO05D008320 1.6e-57 227.3 287 59.9
SGA_v2.0_scaffold101G29789 Striga asiatica HOM05D006334 ORTHO05D008320 3.6e-57 226.1 139 82.0
Glyma.12G213500 Glycine max HOM05D006334 ORTHO05D008320 6.2e-57 225.3 140 82.9
Carub.0008s0614 Capsella rubella HOM05D006334 ORTHO05D008320 1.1e-56 224.6 303 60.1
MSTRG.27096 Avicennia marina HOM05D006334 ORTHO05D008320 1.4e-56 224.2 297 54.9
TPR.G19971 Trifolium pratense HOM05D006334 ORTHO05D008320 2.3e-56 223.4 140 82.1
Sed0009538 Sechium edule HOM05D006334 ORTHO05D008320 4.0e-56 222.6 293 60.8
Glyma.13G288200 Glycine max HOM05D006334 ORTHO05D008320 8.9e-56 221.5 301 55.5
FAN16G3226 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.5e-55 220.7 201 80.1
unitig_748.g7233 Utricularia gibba HOM05D006334 ORTHO05D008320 1.5e-55 220.7 298 53.4
Migut.M01801 Erythranthe guttata HOM05D006334 ORTHO05D008320 4.4e-55 219.2 313 51.1
A03p57090 Brassica napus HOM05D006334 ORTHO05D008320 7.5e-55 218.4 144 81.9
BraA03t14779Z Brassica rapa HOM05D006334 ORTHO05D008320 7.5e-55 218.4 144 81.9
BcaNung03057 Brassica carinata HOM05D006334 ORTHO05D008320 1.3e-54 217.6 303 59.4
BolC1t02259H Brassica oleracea HOM05D006334 ORTHO05D008320 3.7e-54 216.1 303 59.1
BcaC06g32710 Brassica carinata HOM05D006334 ORTHO05D008320 8.3e-54 214.9 143 80.4
C07p54970 Brassica napus HOM05D006334 ORTHO05D008320 8.3e-54 214.9 143 80.4
BraA01t01781Z Brassica rapa HOM05D006334 ORTHO05D008320 1.9e-53 213.8 303 59.1
Lalb_Chr24g0400251 Lupinus albus HOM05D006334 ORTHO05D008320 4.1e-53 212.6 301 58.1
C01p23260 Brassica napus HOM05D006334 ORTHO05D008320 7.0e-53 211.8 303 58.7
BolC7t46013H Brassica oleracea HOM05D006334 ORTHO05D001501 2.1e-49 200.3 298 58.7
A01p18260 Brassica napus HOM05D006334 ORTHO05D008320 2.8e-49 199.9 286 59.1
Actinidia35324 Actinidia chinensis HOM05D006334 ORTHO05D008320 6.2e-49 198.7 134 81.3
Mapoly0114s0022 Marchantia polymorpha HOM05D006334 ORTHO05D008320 4.4e-47 192.6 299 49.5
SEGI_34639 Sequoiadendron giganteum HOM05D006334 ORTHO05D008320 9.9e-47 191.4 166 67.5
Pp3c20_19360 Physcomitrium patens HOM05D006334 ORTHO05D008320 2.4e-45 186.8 295 51.5
Actinidia10714 Actinidia chinensis HOM05D006334 ORTHO05D008320 4.6e-44 182.6 104 88.5
SMO143G0307 Selaginella moellendorffii HOM05D006334 ORTHO05D008320 7.8e-44 181.8 130 70.8
AagrBONN_evm.TU.Sc2ySwM_228.581 Anthoceros agrestis HOM05D006334 ORTHO05D008320 1.1e-42 177.9 193 57.5
AagrBONN_evm.TU.Sc2ySwM_368.826 Anthoceros agrestis HOM05D006334 ORTHO05D008320 1.1e-40 171.4 191 55.5
ATR0697G296 Amborella trichopoda HOM05D006334 ORTHO05D008320 5.1e-35 152.5 223 52.0
CBR_g8852 Chara braunii HOM05D006334 ORTHO05D008320 6.6e-35 152.1 192 47.9
Oeu032444.1 Olea europaea HOM05D006334 ORTHO05D008320 3.8e-30 136.3 106 69.8
FAN16G1435 Fragaria x ananassa HOM05D006334 ORTHO05D008320 3.2e-29 133.3 70 98.6
Cpa.g.sc97.55 Carica papaya HOM05D006334 ORTHO05D008320 9.3e-29 131.7 213 53.5
Cre02.g101100 Chlamydomonas reinhardtii HOM05D006334 ORTHO05D008320 3.5e-28 129.8 119 54.6
Cpa.g.sc97.53 Carica papaya HOM05D006334 ORTHO05D008320 2.6e-23 113.6 70 82.9
Haze_27349 Corylus avellana HOM05D006334 ORTHO05D008320 1.2e-20 104.8 276 32.6
BcaC09g50615 Brassica carinata HOM05D006334 ORTHO05D008320 7.4e-18 95.5 221 51.1
Actinidia35323 Actinidia chinensis HOM05D006334 ORTHO05D030819 3.2e-13 80.1 94 56.4
Actinidia10713 Actinidia chinensis HOM05D006334 ORTHO05D030819 3.0e-11 73.6 63 68.3


User provided reference genes

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