Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0037501 Rosa chinensis HOM05D003605 ORTHO05D004292 5.8e-32 140.2 67 100.0
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 5.5e-14 80.5 58 72.4
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 4.6e-13 77.4 59 69.5
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 6.0e-13 77.0 58 70.7
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 6.0e-13 77.0 58 70.7
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 6.0e-13 77.0 58 70.7
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 3.0e-12 74.7 58 65.5
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 3.0e-12 74.7 58 65.5
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 5.1e-12 73.9 58 67.2
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 6.7e-12 73.6 58 67.2
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 6.7e-12 73.6 58 67.2
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 6.7e-12 73.6 58 67.2
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 6.7e-12 73.6 58 67.2
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 8.7e-12 73.2 58 67.2
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 8.7e-12 73.2 58 67.2
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 8.7e-12 73.2 58 65.5
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 8.7e-12 73.2 58 67.2
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 1.5e-11 72.4 59 61.0
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 1.5e-11 72.4 58 65.5
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 1.5e-11 72.4 58 63.8
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 1.9e-11 72.0 58 65.5
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 1.9e-11 72.0 58 65.5
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 2.5e-11 71.6 58 65.5
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 2.5e-11 71.6 58 63.8
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 2.5e-11 71.6 58 63.8
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 2.5e-11 71.6 56 64.3
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 2.5e-11 71.6 58 63.8
Dinv16312 Davidia involucrata HOM05D003605 ORTHO05D004292 3.3e-11 71.2 58 63.8
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 3.3e-11 71.2 58 65.5
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 3.3e-11 71.2 58 63.8
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 3.3e-11 71.2 60 61.7
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 62.1
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 63.8
Cpa.g.sc20.227 Carica papaya HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 65.5
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 4.3e-11 70.9 59 62.7
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 4.3e-11 70.9 57 66.7
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 63.8
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 63.8
Oeu051794.2 Olea europaea HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 65.5
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 4.3e-11 70.9 59 61.0
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 63.8
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 65.5
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 4.3e-11 70.9 58 62.1
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 5.6e-11 70.5 58 63.8
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 5.6e-11 70.5 58 63.8
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 5.6e-11 70.5 58 62.1
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 7.4e-11 70.1 58 63.8
Gohir.A13G028200 Gossypium hirsutum HOM05D003605 ORTHO05D004292 7.4e-11 70.1 58 63.8
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 7.4e-11 70.1 58 63.8
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 7.4e-11 70.1 58 63.8
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 62.1
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 62.1
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 63.8
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 62.1
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 62.1
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 60.3
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 63.8
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 9.6e-11 69.7 56 64.3
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 9.6e-11 69.7 58 62.1
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 1.3e-10 69.3 58 62.1
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 1.3e-10 69.3 58 63.8
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.3e-10 69.3 58 62.1
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 1.3e-10 69.3 58 63.8
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 1.6e-10 68.9 58 60.3
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 2.1e-10 68.6 58 60.3
Atru.chr4.227 Acer truncatum HOM05D003605 ORTHO05D004292 2.1e-10 68.6 58 60.3
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 2.1e-10 68.6 59 55.9
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 2.1e-10 68.6 58 62.1
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 2.1e-10 68.6 58 60.3
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 2.1e-10 68.6 58 62.1
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 2.8e-10 68.2 58 62.1
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 2.8e-10 68.2 58 62.1
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 2.8e-10 68.2 58 62.1
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 3.7e-10 67.8 59 57.6
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 3.7e-10 67.8 58 63.8
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 3.7e-10 67.8 58 56.9
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 3.7e-10 67.8 59 59.3
SEGI_19936 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 3.7e-10 67.8 58 55.2
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 4.8e-10 67.4 58 60.3
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 4.8e-10 67.4 58 62.1
CSS0003079 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 4.8e-10 67.4 52 67.3
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 4.8e-10 67.4 57 64.9
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 4.8e-10 67.4 58 60.3
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 4.8e-10 67.4 58 62.1
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 4.8e-10 67.4 58 60.3
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 4.8e-10 67.4 58 60.3
Oeu032173.1 Olea europaea HOM05D003605 ORTHO05D004292 6.2e-10 67.0 58 62.1
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 6.2e-10 67.0 58 58.6
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 8.2e-10 66.6 58 60.3
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 8.2e-10 66.6 58 58.6
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 8.2e-10 66.6 58 62.1
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 8.2e-10 66.6 58 62.1
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 8.2e-10 66.6 58 62.1
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 8.2e-10 66.6 58 60.3
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.1e-09 66.2 58 62.1
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 1.1e-09 66.2 58 58.6
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 1.1e-09 66.2 58 60.3
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 1.1e-09 66.2 58 58.6
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 1.1e-09 66.2 58 60.3
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 1.1e-09 66.2 58 56.9
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.4e-09 65.9 58 60.3
Lalb_Chr13g0296071 Lupinus albus HOM05D003605 ORTHO05D004292 1.4e-09 65.9 52 63.5
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 1.4e-09 65.9 58 60.3
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 1.4e-09 65.9 58 60.3
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.8e-09 65.5 58 58.6
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 1.8e-09 65.5 58 62.1
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 1.8e-09 65.5 58 62.1
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 1.8e-09 65.5 58 58.6
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 3.1e-09 64.7 58 55.2
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 4.0e-09 64.3 58 56.9
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 4.0e-09 64.3 59 55.9
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 5.3e-09 63.9 58 55.2
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 6.9e-09 63.5 58 56.9
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 6.9e-09 63.5 57 59.6
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 9.0e-09 63.2 61 52.5
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 9.0e-09 63.2 58 60.3
arahy.Tifrunner.gnm1.ann1.7QDM7Z Arachis hypogaea HOM05D000001 ORTHO05D000003 1.2e-08 62.8 58 56.9
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.2e-08 62.8 58 56.9
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.2e-08 62.8 58 56.9
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.2e-08 62.8 58 56.9
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 1.5e-08 62.4 58 58.6
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 2.0e-08 62.0 58 53.4
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.6e-08 61.6 58 55.2
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 4.5e-08 60.8 58 56.9
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 5.8e-08 60.5 59 54.2
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 7.6e-08 60.1 58 55.2
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 7.6e-08 60.1 58 55.2
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 1.0e-07 59.7 58 53.4
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 1.3e-07 59.3 58 53.4
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 1.3e-07 59.3 59 50.8
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 1.7e-07 58.9 58 55.2
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 2.9e-07 58.2 63 54.0
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 2.9e-07 58.2 59 49.2
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 3.8e-07 57.8 58 53.4
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 3.8e-07 57.8 58 53.4
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 3.8e-07 57.8 58 51.7
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 3.8e-07 57.8 58 51.7
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 4.9e-07 57.4 58 51.7
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 4.9e-07 57.4 58 51.7
Cre02.g147302 Chlamydomonas reinhardtii HOM05D003605 ORTHO05D004292 1.1e-06 56.2 59 45.8
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 2.5e-06 55.1 58 53.4
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 7.1e-06 53.5 63 52.4
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 9.3e-06 53.1 58 51.7


User provided reference genes

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