Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 1.1e-184 649.8 338 100.0
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 2.1e-154 549.3 338 86.7
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 1.7e-143 513.1 339 80.2
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.2e-122 443.7 340 71.5
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 3.0e-116 422.5 341 67.4
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.5e-115 420.2 340 67.1
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 1.2e-114 417.2 341 67.2
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.6e-114 416.8 347 67.1
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.6e-114 416.8 347 67.1
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.1e-114 416.4 345 65.2
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 8.9e-113 411.0 343 65.0
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 2.0e-112 409.8 349 63.0
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 5.8e-112 408.3 349 62.8
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 7.5e-112 407.9 342 62.9
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.7e-111 406.8 343 64.4
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 2.2e-111 406.4 342 63.7
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 6.4e-111 404.8 346 63.9
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 1.1e-110 404.1 342 63.5
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 5.4e-110 401.7 349 63.6
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 6.0e-109 398.3 343 62.1
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 7.8e-109 397.9 341 66.0
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 1.7e-108 396.7 342 62.9
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 5.6e-107 391.7 347 62.8
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 1.6e-106 390.2 344 62.8
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 3.6e-106 389.0 337 65.3
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 3.1e-105 386.0 343 64.1
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 2.0e-104 383.3 343 61.8
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 2.6e-104 382.9 343 63.8
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 3.4e-104 382.5 339 62.8
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 3.4e-104 382.5 352 61.4
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 4.4e-104 382.1 342 62.3
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 7.5e-104 381.3 342 60.8
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 9.8e-104 380.9 343 61.5
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.9e-103 379.4 341 59.2
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 8.3e-103 377.9 343 60.9
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 1.9e-102 376.7 342 60.2
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 4.1e-102 375.6 351 59.5
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 5.4e-102 375.2 345 60.3
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 7.1e-102 374.8 312 63.8
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.6e-101 373.6 342 60.8
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 4.6e-101 372.1 344 59.9
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 7.8e-101 371.3 345 59.7
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.3e-100 370.5 344 58.4
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.3e-100 370.5 344 58.4
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 1.7e-100 370.2 310 63.9
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 1.7e-100 370.2 343 59.8
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 2.3e-100 369.8 345 59.4
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.3e-100 369.8 287 66.6
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 1.5e-99 367.1 346 60.1
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 3.3e-99 365.9 345 58.6
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 3.3e-99 365.9 344 58.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 3.3e-99 365.9 279 69.2
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 3.3e-99 365.9 344 59.6
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 4.3e-99 365.5 343 60.9
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 4.3e-99 365.5 343 59.8
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 1.2e-98 364.0 343 59.8
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 2.1e-98 363.2 346 59.2
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.2e-96 357.5 340 59.1
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 1.3e-95 354.0 340 56.5
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 1.7e-95 353.6 341 56.9
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 2.9e-95 352.8 340 59.1
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 3.8e-95 352.4 353 58.1
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.4e-94 350.5 342 57.6
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 1.7e-92 343.6 341 57.8
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 3.9e-92 342.4 276 63.8
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 3.3e-91 339.3 346 57.2
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 5.6e-91 338.6 336 56.2
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 8.9e-89 331.3 346 56.6
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 1.2e-88 330.9 276 61.2
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 9.9e-88 327.8 346 56.6
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.7e-87 327.0 307 58.3
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.9e-86 323.6 346 56.4
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 2.4e-86 323.2 347 55.3
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 2.4e-86 323.2 347 55.3
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 3.2e-86 322.8 347 55.0
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 3.2e-86 322.8 345 54.5
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 2.1e-85 320.1 314 58.6
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 2.7e-85 319.7 349 53.6
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 2.7e-85 319.7 347 54.2
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 3.5e-85 319.3 345 54.8
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 1.1e-83 314.3 345 55.9
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 3.3e-83 312.8 351 54.1
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 3.3e-83 312.8 340 52.6
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 2.1e-82 310.1 306 53.6
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 2.0e-80 303.5 349 51.9
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 3.8e-79 299.3 347 54.2
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 4.0e-73 279.3 323 49.5
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 6.7e-68 261.9 315 51.1
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 5.8e-64 248.8 205 62.4
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 5.8e-64 248.8 133 93.2
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 3.5e-61 239.6 353 41.9
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 1.3e-58 231.1 183 60.7
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 2.4e-57 226.9 282 47.2
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 6.9e-57 225.3 227 54.6
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.1e-46 191.4 266 40.2
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.7e-42 177.6 121 70.2
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 7.2e-30 135.6 114 62.3
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 9.4e-30 135.2 264 33.3
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.6e-27 127.1 266 32.7
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.3e-26 124.8 254 40.9
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 2.7e-24 117.1 114 55.3
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 7.7e-24 115.5 190 45.3
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 6.5e-23 112.5 134 46.3
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.8e-17 94.4 256 28.1
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 4.5e-16 89.7 279 26.2
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 4.1e-09 66.6 101 38.6


User provided reference genes

Program Settings