Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 4.1e-52 208.0 120 100.0
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 3.3e-38 161.8 85 91.8
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 1.9e-25 119.4 119 47.1
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 9.4e-25 117.1 119 46.2
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-22 109.8 111 51.4
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-22 109.8 117 48.7
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-22 109.4 111 51.4
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 4.4e-22 108.2 109 51.4
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 5.7e-22 107.8 113 45.1
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 9.7e-22 107.1 111 48.6
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-21 106.3 116 47.4
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-21 105.1 114 52.6
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 3.7e-21 105.1 114 52.6
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 1.8e-20 102.8 114 51.8
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 3.1e-20 102.1 114 48.2
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 7.0e-20 100.9 114 47.4
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-19 100.1 111 46.8
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 1.6e-19 99.8 85 57.6
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-19 99.4 85 57.6
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.9e-19 97.8 107 45.8
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.9e-19 97.8 117 45.3
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 7.7e-19 97.4 117 44.4
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 7.7e-19 97.4 98 46.9
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-18 97.1 114 46.5
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 1.0e-18 97.1 112 46.4
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.0e-18 97.1 106 47.2
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-18 97.1 104 46.2
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 2.9e-18 95.5 117 46.2
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.9e-18 95.5 112 45.5
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 3.8e-18 95.1 95 47.4
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-17 93.2 112 44.6
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 2.5e-17 92.4 107 43.9
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 3.2e-17 92.0 114 46.5
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.4e-17 90.5 101 43.6
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-16 89.7 103 41.7
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 2.7e-16 89.0 113 45.1
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 6.1e-16 87.8 86 50.0
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 6.1e-16 87.8 107 43.0
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 8.0e-16 87.4 86 53.5
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.0e-16 87.4 106 47.2
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 1.0e-15 87.0 85 49.4
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 3.0e-15 85.5 87 50.6
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.0e-15 85.1 85 50.6
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 4.0e-15 85.1 112 42.9
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 5.2e-15 84.7 100 46.0
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.2e-15 84.7 87 48.3
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.6e-14 82.4 105 41.0
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 5.7e-14 81.3 79 50.6
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 9.8e-14 80.5 78 51.3
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.3e-13 80.1 90 44.4
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.7e-13 79.7 85 49.4
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.2e-13 79.3 85 50.6
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 2.2e-13 79.3 112 38.4
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 2.8e-13 79.0 87 46.0
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.8e-13 79.0 83 49.4
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.8e-13 79.0 79 49.4
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 3.1e-12 75.5 95 42.1
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 4.1e-12 75.1 106 38.7
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 9.1e-12 73.9 87 47.1
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 4.5e-11 71.6 105 39.0
FAN11G2439 Fragaria x ananassa HOM05D046867 ORTHO05D045776 4.5e-11 71.6 65 52.3
FvH4_3g34330 Fragaria vesca HOM05D046867 ORTHO05D045776 5.9e-11 71.2 65 52.3
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-10 70.1 103 37.9
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 3.8e-10 68.6 81 46.9
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 3.8e-10 68.6 107 38.3
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 3.8e-10 68.6 61 59.0
FAN18G1324 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.6e-10 67.8 65 49.2
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-09 67.0 95 37.9
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 2.5e-09 65.9 60 51.7
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-09 65.5 54 59.3
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.2e-09 65.1 110 38.2
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.5e-09 64.7 65 49.2
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 2.1e-08 62.8 72 43.1
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.6e-08 62.0 93 36.6
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.6e-08 62.0 93 36.6
RcHm_v2.0_Chr5g0004021 Rosa chinensis HOM05D000003 ORTHO05D006737 3.6e-08 62.0 68 50.0
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.1e-08 61.2 111 32.4
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.0e-08 60.8 42 66.7
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 8.0e-08 60.8 67 47.8
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-07 60.1 70 42.9
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-07 60.1 63 47.6
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 5.2e-07 58.2 88 35.2
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.8e-07 57.8 56 48.2
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.8e-07 57.8 72 38.9
QL10p030412 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-06 56.6 82 36.6
Aqoxy3G01714 Aquilegia oxysepala HOM05D009705 ORTHO05D000022 2.0e-06 56.2 80 35.0
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-06 56.2 83 36.1
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 2.6e-06 55.8 56 48.2
QL09p018494 Quercus lobata HOM05D000003 ORTHO05D000022 2.6e-06 55.8 74 36.5
Dinv24219 Davidia involucrata HOM05D000003 ORTHO05D011454 4.4e-06 55.1 89 34.8
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 4.4e-06 55.1 56 48.2
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.4e-06 55.1 55 49.1
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.4e-06 55.1 65 40.0
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 5.7e-06 54.7 88 33.0
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 5.7e-06 54.7 47 51.1
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 7.5e-06 54.3 62 40.3
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.5e-06 54.3 77 41.6
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 9.8e-06 53.9 83 33.7


User provided reference genes

Program Settings