Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0035851 Rosa chinensis HOM05D000832 ORTHO05D015072 8.3e-70 266.9 136 100.0
RcHm_v2.0_Chr5g0035591 Rosa chinensis HOM05D000832 ORTHO05D348372 9.9e-39 163.7 90 90.0
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 4.6e-36 154.8 89 89.9
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.8e-33 144.8 92 80.4
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 1.8e-32 142.9 89 83.1
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.8e-32 142.9 89 83.1
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.8e-32 142.9 89 83.1
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.6e-31 139.0 89 82.0
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 1.8e-27 126.3 95 68.4
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 3.0e-27 125.6 89 70.8
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 5.1e-27 124.8 91 72.5
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 2.2e-25 119.4 92 68.5
Cpa.g.sc1.236 Carica papaya HOM05D000832 ORTHO05D000982 1.1e-24 117.1 92 68.5
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 1.1e-24 117.1 95 66.3
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 6.9e-24 114.4 92 67.4
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 9.0e-24 114.0 92 69.6
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 9.0e-24 114.0 104 62.5
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 1.5e-23 113.2 92 66.3
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 3.4e-23 112.1 101 63.4
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 4.5e-23 111.7 92 66.3
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 1.3e-22 110.2 91 67.0
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 1.7e-22 109.8 92 64.1
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.7e-22 109.8 92 67.4
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 2.9e-22 109.0 92 65.2
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 2.9e-22 109.0 102 60.8
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 5.0e-22 108.2 92 66.3
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 5.0e-22 108.2 92 67.4
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 5.0e-22 108.2 92 64.1
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 6.5e-22 107.8 92 66.3
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 8.5e-22 107.5 91 61.5
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 1.1e-21 107.1 92 63.0
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.4e-21 106.7 92 65.2
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 1.4e-21 106.7 92 65.2
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 1.4e-21 106.7 91 65.9
BcaC05g26647 Brassica carinata HOM05D000832 ORTHO05D000982 1.9e-21 106.3 93 63.4
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 2.5e-21 105.9 93 61.3
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 3.2e-21 105.5 91 63.7
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 3.2e-21 105.5 92 66.3
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 4.2e-21 105.1 93 66.7
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 4.2e-21 105.1 92 64.1
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 5.5e-21 104.8 92 65.2
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 7.2e-21 104.4 92 63.0
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 7.2e-21 104.4 94 59.6
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 9.4e-21 104.0 92 62.0
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 9.4e-21 104.0 127 50.4
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 9.4e-21 104.0 92 62.0
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.2e-20 103.6 90 62.2
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 1.2e-20 103.6 91 63.7
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.2e-20 103.6 92 62.0
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 1.2e-20 103.6 91 63.7
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 1.2e-20 103.6 97 60.8
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.6e-20 103.2 92 64.1
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.1e-20 102.8 92 62.0
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 2.1e-20 102.8 93 61.3
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 2.1e-20 102.8 98 56.1
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 2.7e-20 102.4 92 62.0
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 2.7e-20 102.4 91 62.6
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 2.7e-20 102.4 91 62.6
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 2.7e-20 102.4 91 62.6
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 2.7e-20 102.4 91 62.6
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 2.7e-20 102.4 92 63.0
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 2.7e-20 102.4 92 60.9
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 3.6e-20 102.1 91 62.6
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 4.6e-20 101.7 92 60.9
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 4.6e-20 101.7 92 63.0
Glyma.02G117816 Glycine max HOM05D000832 ORTHO05D015072 6.1e-20 101.3 91 61.5
Glyma.02G118132 Glycine max HOM05D000832 ORTHO05D015072 6.1e-20 101.3 91 61.5
Glyma.02G130832 Glycine max HOM05D000832 ORTHO05D015072 6.1e-20 101.3 91 61.5
Glyma.02G130880 Glycine max HOM05D000832 ORTHO05D015072 6.1e-20 101.3 91 61.5
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 6.1e-20 101.3 92 59.8
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 7.9e-20 100.9 91 63.7
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.0e-19 100.5 92 57.6
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 1.4e-19 100.1 91 61.5
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.4e-19 100.1 103 56.3
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 1.4e-19 100.1 87 66.7
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 1.4e-19 100.1 92 62.0
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 1.8e-19 99.8 92 59.8
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 1.8e-19 99.8 88 64.8
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 1.8e-19 99.8 92 57.6
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 1.8e-19 99.8 97 56.7
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 2.3e-19 99.4 103 55.3
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 3.0e-19 99.0 92 57.6
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 3.0e-19 99.0 92 57.6
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 3.0e-19 99.0 94 61.7
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 3.0e-19 99.0 92 58.7
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 3.9e-19 98.6 91 58.2
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.1e-18 97.1 97 54.6
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 1.5e-18 96.7 87 63.2
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 1.9e-18 96.3 118 47.5
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 1.9e-18 96.3 89 56.2
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 2.5e-18 95.9 87 60.9
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 3.3e-18 95.5 88 62.5
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 3.3e-18 95.5 87 60.9
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 4.3e-18 95.1 89 61.8
RcHm_v2.0_Chr1g0379921 Rosa chinensis HOM05D000832 ORTHO05D000982 4.3e-18 95.1 56 91.1
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 5.7e-18 94.7 88 60.2
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 5.7e-18 94.7 91 56.0
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 7.4e-18 94.4 87 58.6
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 7.4e-18 94.4 97 55.7
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 7.4e-18 94.4 92 57.6
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 9.7e-18 94.0 84 63.1
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 9.7e-18 94.0 97 54.6
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 9.7e-18 94.0 87 62.1
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 1.3e-17 93.6 90 58.9
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 1.7e-17 93.2 91 58.2
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 1.7e-17 93.2 88 59.1
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.7e-17 93.2 87 60.9
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 2.2e-17 92.8 97 55.7
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 2.8e-17 92.4 92 57.6
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 2.8e-17 92.4 91 54.9
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 4.8e-17 91.7 97 52.6
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 6.3e-17 91.3 88 58.0
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 8.2e-17 90.9 105 52.4
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 8.2e-17 90.9 90 57.8
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 1.1e-16 90.5 88 55.7
RcHm_v2.0_Chr5g0035671 Rosa chinensis HOM05D000832 ORTHO05D015072 1.1e-16 90.5 48 93.8
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 1.4e-16 90.1 92 56.5
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 1.8e-16 89.7 84 59.5
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 3.1e-16 89.0 93 54.8
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 4.1e-16 88.6 89 58.4
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 4.1e-16 88.6 90 56.7
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 4.1e-16 88.6 87 59.8
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 5.3e-16 88.2 99 54.5
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 5.3e-16 88.2 99 54.5
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 5.3e-16 88.2 87 56.3
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 5.3e-16 88.2 98 51.0
RcHm_v2.0_Chr1g0330341 Rosa chinensis HOM05D000832 ORTHO05D015072 6.9e-16 87.8 47 95.7
RcHm_v2.0_Chr1g0355571 Rosa chinensis HOM05D000832 ORTHO05D015072 9.1e-16 87.4 48 93.8
RcHm_v2.0_Chr5g0063711 Rosa chinensis HOM05D000832 ORTHO05D015072 9.1e-16 87.4 48 93.8
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.2e-15 87.0 93 51.6
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.2e-15 87.0 117 47.0
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 1.5e-15 86.7 89 56.2
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 3.4e-15 85.5 90 55.6
RcHm_v2.0_Chr2g0155351 Rosa chinensis HOM05D000832 ORTHO05D015072 3.4e-15 85.5 49 89.8
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 7.7e-15 84.3 93 52.7
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 7.7e-15 84.3 98 53.1
RcHm_v2.0_Chr6g0312321 Rosa chinensis HOM05D000832 ORTHO05D015072 2.2e-14 82.8 46 93.5
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 3.8e-14 82.0 86 57.0
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 3.8e-14 82.0 97 49.5
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 8.5e-14 80.9 89 50.6
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.1e-13 80.5 60 68.3
RcHm_v2.0_Chr5g0035491 Rosa chinensis HOM05D000832 ORTHO05D025619 1.1e-13 80.5 42 88.1
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 1.4e-13 80.1 87 56.3
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 7.2e-13 77.8 56 75.0
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 1.6e-12 76.6 90 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 7.9e-12 74.3 93 45.2
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 7.9e-12 74.3 93 45.2
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 7.9e-12 74.3 106 40.6
RcHm_v2.0_Chr4g0394861 Rosa chinensis HOM05D000832 ORTHO05D015072 1.4e-11 73.6 42 85.7
Cre03.g171950 Chlamydomonas reinhardtii HOM05D000832 ORTHO05D000982 1.3e-06 57.0 45 55.6
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 8.5e-06 54.3 54 48.1


User provided reference genes

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