Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 6.3e-39 163.7 86 100.0
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 2.6e-32 141.7 86 86.0
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 7.4e-32 140.2 86 84.9
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 9.7e-32 139.8 86 84.9
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 8.2e-31 136.7 86 84.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 1.7e-28 129.0 86 79.1
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 1.5e-24 115.9 85 72.9
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.7e-24 114.0 83 73.5
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.3e-23 112.8 83 73.5
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.7e-23 112.5 83 72.3
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.7e-23 111.3 67 85.1
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 5.3e-22 107.5 77 75.3
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 5.3e-22 107.5 71 74.6
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 4.5e-21 104.4 85 68.2
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 8.5e-20 100.1 72 70.8
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 8.5e-20 100.1 85 64.7
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 1.1e-19 99.8 80 67.5
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.5e-19 99.4 72 72.2
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 1.5e-19 99.4 85 62.4
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 2.5e-19 98.6 83 65.1
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 9.4e-19 96.7 77 68.8
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 9.4e-19 96.7 85 63.5
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 9.4e-19 96.7 85 63.5
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 9.4e-19 96.7 86 62.8
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 1.6e-18 95.9 77 62.3
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.6e-18 95.9 68 75.0
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 3.6e-18 94.7 83 66.3
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 4.7e-18 94.4 68 73.5
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 6.1e-18 94.0 66 72.7
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.0e-17 93.2 79 64.6
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.4e-17 92.8 79 64.6
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.8e-17 92.4 64 71.9
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.8e-17 92.4 75 65.3
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 2.3e-17 92.0 67 71.6
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 4.0e-17 91.3 72 68.1
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 5.2e-17 90.9 77 64.9
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 6.8e-17 90.5 66 71.2
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 6.8e-17 90.5 64 73.4
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 6.8e-17 90.5 64 73.4
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.2e-16 89.7 64 71.9
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.5e-16 89.4 66 69.7
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.5e-16 89.4 78 62.8
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 2.0e-16 89.0 63 73.0
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 4.4e-16 87.8 84 58.3
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 4.4e-16 87.8 75 60.0
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 5.7e-16 87.4 66 68.2
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 5.7e-16 87.4 85 56.5
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 5.7e-16 87.4 79 58.2
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 9.8e-16 86.7 86 59.3
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.3e-15 86.3 67 64.2
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.3e-15 86.3 75 62.7
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 1.3e-15 86.3 83 57.8
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.8e-15 85.1 61 70.5
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 6.3e-15 84.0 70 64.3
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.1e-14 83.2 66 62.1
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 1.1e-14 83.2 86 57.0
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.4e-14 82.8 86 57.0
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 1.8e-14 82.4 56 73.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 2.4e-14 82.0 59 72.9
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 3.1e-14 81.6 85 55.3
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 5.4e-14 80.9 86 54.7
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 9.1e-14 80.1 73 56.2
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.2e-13 79.7 69 58.0
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 1.2e-13 79.7 73 56.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.2e-13 79.7 79 55.7
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.2e-13 79.7 68 60.3
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.6e-13 79.3 55 72.7
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.5e-13 78.2 58 67.2
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 4.5e-13 77.8 67 58.2
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 4.5e-13 77.8 67 58.2
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 7.7e-13 77.0 67 58.2
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 7.7e-13 77.0 67 58.2
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 7.7e-13 77.0 75 56.0
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 1.0e-12 76.6 79 58.2
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 1.7e-12 75.9 67 56.7
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 2.9e-12 75.1 75 54.7
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 3.8e-12 74.7 75 54.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 5.0e-12 74.3 67 58.2
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 5.0e-12 74.3 68 60.3
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 8.6e-12 73.6 59 62.7
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.1e-11 73.2 67 56.7
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.9e-11 72.4 59 62.7
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 4.2e-11 71.2 50 72.0
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 4.2e-11 71.2 66 56.1
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.6e-10 69.3 83 50.6
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 3.6e-10 68.2 61 57.4
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 4.7e-10 67.8 46 73.9
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 4.7e-10 67.8 63 58.7
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 3.0e-09 65.1 50 66.0
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 1.5e-08 62.8 50 64.0
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.0e-08 62.4 57 52.6
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.0e-08 62.4 57 52.6
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 3.4e-08 61.6 56 50.0
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 7.5e-08 60.5 46 67.4
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 9.8e-08 60.1 63 55.6
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.3e-07 59.7 59 54.2
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.3e-07 59.7 60 50.0
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 1.1e-06 56.6 58 51.7
MELO3C030681.2 Cucumis melo HOM05D007448 ORTHO05D009392 3.1e-06 55.1 42 59.5


User provided reference genes

Program Settings