Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0035101 Rosa chinensis HOM05D001593 ORTHO05D010032 5.2e-76 287.7 154 100.0
FvH4_3g20810 Fragaria vesca HOM05D001593 ORTHO05D010032 3.0e-68 261.9 155 91.6
FAN16G0784 Fragaria x ananassa HOM05D001593 ORTHO05D010032 9.8e-67 256.9 155 90.3
FAN25G3755 Fragaria x ananassa HOM05D001593 ORTHO05D010032 3.7e-66 255.0 155 90.3
Prupe.4G188200 Prunus persica HOM05D001593 ORTHO05D010032 1.6e-53 213.0 153 73.9
MD03G1220500 Malus domestica HOM05D001593 ORTHO05D010032 1.7e-47 193.0 155 68.4
MD03G1220400 Malus domestica HOM05D001593 ORTHO05D010032 3.4e-43 178.7 154 66.9
ClCG10G006650 Citrullus lanatus HOM05D001593 ORTHO05D010032 1.6e-37 159.8 156 55.1
Sed0008194 Sechium edule HOM05D001593 ORTHO05D010032 3.6e-37 158.7 156 55.1
CsaV3_3G006040 Cucumis sativus L. HOM05D001593 ORTHO05D010032 1.2e-35 153.7 156 52.6
ClCG10G006610 Citrullus lanatus HOM05D001593 ORTHO05D010032 1.5e-35 153.3 159 52.2
CsaV3_3G006030 Cucumis sativus L. HOM05D001593 ORTHO05D010032 1.9e-33 146.4 158 50.6
MELO3C016546.2 Cucumis melo HOM05D001593 ORTHO05D010032 3.5e-32 142.1 158 49.4
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 1.4e-28 130.2 149 49.0
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 2.4e-28 129.4 151 45.7
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 6.8e-28 127.9 151 45.0
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 8.9e-28 127.5 152 46.1
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 5.8e-27 124.8 151 46.4
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 7.6e-27 124.4 154 46.1
FAN16G2191 Fragaria x ananassa HOM05D001593 ORTHO05D010032 9.9e-27 124.0 154 46.1
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 1.4e-25 120.2 153 42.5
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 3.2e-25 119.0 151 45.0
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 3.2e-25 119.0 148 45.9
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 2.7e-24 115.9 151 39.1
QL08p018774 Quercus lobata HOM05D001593 ORTHO05D010032 2.7e-24 115.9 153 44.4
CiPaw.12G122400 Carya illinoinensis HOM05D001593 ORTHO05D010032 4.6e-24 115.2 156 44.2
ECA246G1386 Erigeron canadensis HOM05D001593 ORTHO05D010032 3.9e-23 112.1 150 42.7
Lsat_1_v5_gn_5_7021 Lactuca sativa HOM05D001593 ORTHO05D010032 3.9e-23 112.1 151 42.4
Sabra16G0268900 Salix brachista HOM05D001593 ORTHO05D010032 5.1e-23 111.7 131 42.0
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 6.6e-23 111.3 151 39.1
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 6.6e-23 111.3 151 43.0
Actinidia05168 Actinidia chinensis HOM05D001593 ORTHO05D010032 1.5e-22 110.2 186 38.7
TPR.G7332 Trifolium pratense HOM05D001593 ORTHO05D010032 1.9e-22 109.8 153 41.8
arahy.Tifrunner.gnm1.ann1.SVGI7B Arachis hypogaea HOM05D001593 ORTHO05D010032 2.5e-22 109.4 156 42.3
CSS0027856 Camellia sinensis var. sinensis HOM05D001593 ORTHO05D010032 2.5e-22 109.4 209 37.3
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 2.5e-22 109.4 147 45.6
Sabra16G0267000 Salix brachista HOM05D001593 ORTHO05D010032 4.3e-22 108.6 151 37.7
SalBow7G3151 Salvia bowleyana HOM05D001593 ORTHO05D010032 7.3e-22 107.8 153 41.8
Lalb_Chr03g0030461 Lupinus albus HOM05D001593 ORTHO05D010032 1.6e-21 106.7 155 39.4
arahy.Tifrunner.gnm1.ann1.I7A6WZ Arachis hypogaea HOM05D001593 ORTHO05D010032 2.8e-21 105.9 156 41.7
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 3.6e-21 105.5 127 47.2
Lj3g0024706 Lotus japonicus HOM05D001593 ORTHO05D010032 3.6e-21 105.5 128 44.5
FAN21G2072 Fragaria x ananassa HOM05D001593 ORTHO05D010032 4.8e-21 105.1 64 82.8
Lj3g0022181 Lotus japonicus HOM05D001593 ORTHO05D010032 4.8e-21 105.1 128 43.8
Lsat_1_v5_gn_5_7041 Lactuca sativa HOM05D001593 ORTHO05D010032 6.2e-21 104.8 149 41.6
VMungo1309G1650 Vigna mungo HOM05D001593 ORTHO05D010032 6.2e-21 104.8 153 41.2
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 1.4e-20 103.6 127 44.1
Aqoxy4G01373 Aquilegia oxysepala HOM05D001593 ORTHO05D010032 1.8e-20 103.2 135 38.5
Lalb_Chr17g0345681 Lupinus albus HOM05D001593 ORTHO05D010032 1.8e-20 103.2 152 41.4
Medtr3g055120 Medicago truncatula HOM05D001593 ORTHO05D010032 3.1e-20 102.4 154 42.2
VMungo1127G1295 Vigna mungo HOM05D001593 ORTHO05D010032 9.0e-20 100.9 150 40.7
Phvul.011G153600 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 1.5e-19 100.1 153 39.9
Psat4g174160 Pisum sativum HOM05D001593 ORTHO05D010032 4.4e-19 98.6 153 36.6
Medtr3g055130 Medicago truncatula HOM05D001593 ORTHO05D010032 7.6e-19 97.8 155 40.0
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 2.9e-18 95.9 151 39.7
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 3.2e-17 92.4 151 39.1
Phvul.011G154100 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 5.4e-17 91.7 153 36.6
Sed0013638 Sechium edule HOM05D001593 ORTHO05D010032 1.2e-16 90.5 155 36.1
PSO832G0778 Papaver somniferum HOM05D001593 ORTHO05D010032 1.0e-15 87.4 153 37.9
CDE05G2529 Ceratophyllum demersum HOM05D001593 ORTHO05D010032 3.0e-15 85.9 115 42.6
SEGI_29216 Sequoiadendron giganteum HOM05D001593 ORTHO05D000001 2.5e-14 82.8 119 37.8
PGR031G2663 Punica granatum HOM05D001593 ORTHO05D010032 9.6e-14 80.9 86 45.3
MELO3C032197.2 Cucumis melo HOM05D001593 ORTHO05D010032 4.0e-12 75.5 60 56.7
MD11G1238400 Malus domestica HOM05D001593 ORTHO05D010032 9.0e-12 74.3 105 44.8
HPP92_001812 Vanilla planifolia HOM05D001593 ORTHO05D010032 9.9e-11 70.9 145 31.7
HPP92_001813 Vanilla planifolia HOM05D001593 ORTHO05D010032 9.9e-11 70.9 145 31.7
HPP92_001814 Vanilla planifolia HOM05D001593 ORTHO05D010032 9.9e-11 70.9 145 31.7
HPP92_001815 Vanilla planifolia HOM05D001593 ORTHO05D010032 9.9e-11 70.9 145 31.7
HPP92_001816 Vanilla planifolia HOM05D001593 ORTHO05D010032 9.9e-11 70.9 145 31.7
HPP92_001817 Vanilla planifolia HOM05D001593 ORTHO05D010032 9.9e-11 70.9 145 31.7
SEGI_19703 Sequoiadendron giganteum HOM05D001593 ORTHO05D010032 1.7e-10 70.1 142 33.1
HPP92_000927 Vanilla planifolia HOM05D001593 ORTHO05D010032 4.9e-10 68.6 127 31.5
ATR0693G208 Amborella trichopoda HOM05D000322 ORTHO05D000186 5.5e-09 65.1 112 33.9
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 7.1e-09 64.7 148 27.0
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 9.3e-09 64.3 126 29.4
CDE01G0729 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 2.7e-08 62.8 107 36.4
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 2.7e-08 62.8 145 31.0
CDE12G0035 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.5e-08 62.4 126 32.5
ATR0693G026 Amborella trichopoda HOM05D000322 ORTHO05D000186 4.6e-08 62.0 139 28.8
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 6.0e-08 61.6 145 30.3
TWI53G1556 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 6.0e-08 61.6 137 25.5
HPP92_011864 Vanilla planifolia HOM05D000322 ORTHO05D000186 6.0e-08 61.6 147 29.9
RcHm_v2.0_Chr5g0035111 Rosa chinensis HOM05D001593 ORTHO05D010032 7.9e-08 61.2 87 44.8
CDE01G0674 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.0e-07 59.3 107 33.6
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 3.0e-07 59.3 140 31.4
CDE12G0840 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.9e-07 58.9 107 35.5
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 3.9e-07 58.9 110 25.5
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 8.7e-07 57.8 129 32.6
QL06p010956 Quercus lobata HOM05D000322 ORTHO05D000186 1.1e-06 57.4 112 28.6
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 1.5e-06 57.0 112 25.0
DCAR_023317 Daucus carota HOM05D000322 ORTHO05D000186 1.9e-06 56.6 123 26.8
MBI14_g31144_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 1.9e-06 56.6 89 36.0
MBI06_g35209_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 5.6e-06 55.1 89 36.0
MBI14_g31146_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 5.6e-06 55.1 75 34.7
SalBow8G2023 Salvia bowleyana HOM05D000322 ORTHO05D000186 7.4e-06 54.7 108 29.6
CDE01G0755 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 9.6e-06 54.3 107 32.7
Dinv29700 Davidia involucrata HOM05D000322 ORTHO05D000186 9.6e-06 54.3 76 36.8
SalBow8G2561 Salvia bowleyana HOM05D000322 ORTHO05D000186 9.6e-06 54.3 122 26.2


User provided reference genes

Program Settings