Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 4.9e-69 264.2 124 100.0
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.2e-62 243.0 124 90.3
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.5e-62 241.1 121 90.9
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 5.8e-62 240.7 124 90.3
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 5.8e-62 240.7 124 90.3
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 5.8e-62 240.7 124 90.3
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 4.1e-39 164.9 124 69.4
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 7.4e-33 144.1 129 58.9
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 2.2e-29 132.5 122 59.0
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 3.1e-23 112.1 117 53.8
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.7e-21 106.3 113 55.8
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 2.2e-21 105.9 121 43.8
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.9e-21 105.5 113 52.2
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 5.0e-21 104.8 102 54.9
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 1.5e-20 103.2 85 62.4
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 1.5e-20 103.2 103 56.3
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 1.5e-20 103.2 103 54.4
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.9e-20 102.8 113 53.1
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 1.9e-20 102.8 121 52.1
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 2.5e-20 102.4 117 50.4
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 2.5e-20 102.4 106 53.8
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 4.2e-20 101.7 97 57.7
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.1e-19 99.4 86 58.1
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.1e-19 99.4 87 57.5
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 2.1e-19 99.4 111 53.2
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 2.1e-19 99.4 114 51.8
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 2.7e-19 99.0 86 58.1
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.4e-18 96.7 72 65.3
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.3e-18 95.9 124 46.0
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 4.0e-18 95.1 109 49.5
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 5.2e-18 94.7 112 48.2
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 3.4e-17 92.0 115 48.7
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 4.4e-17 91.7 102 52.0
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 4.4e-17 91.7 75 64.0
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.7e-17 91.3 100 47.0
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 7.5e-17 90.9 114 48.2
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 9.8e-17 90.5 91 50.5
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 9.8e-17 90.5 91 50.5
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.3e-16 90.1 75 61.3
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.3e-16 90.1 105 47.6
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 2.8e-16 89.0 106 48.1
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 2.8e-16 89.0 101 47.5
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 3.7e-16 88.6 106 45.3
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 6.3e-16 87.8 100 50.0
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 1.1e-15 87.0 119 48.7
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 1.8e-15 86.3 87 55.2
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 1.8e-15 86.3 87 55.2
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 1.8e-15 86.3 87 55.2
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 2.4e-15 85.9 103 44.7
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 4.1e-15 85.1 87 56.3
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 4.1e-15 85.1 87 56.3
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 5.4e-15 84.7 103 44.7
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 5.4e-15 84.7 103 47.6
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 9.1e-15 84.0 100 47.0
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 9.1e-15 84.0 100 47.0
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 9.1e-15 84.0 100 47.0
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.2e-14 83.6 100 47.0
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.2e-14 83.6 100 47.0
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 1.6e-14 83.2 100 47.0
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 5.9e-14 81.3 100 45.0
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 7.7e-14 80.9 104 45.2
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 1.7e-13 79.7 98 45.9
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 1.7e-13 79.7 75 54.7
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-12 77.0 75 53.3
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-12 77.0 98 44.9
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-12 77.0 98 44.9
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 2.1e-11 72.8 121 43.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 3.0e-10 68.9 71 53.5
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 3.0e-10 68.9 92 45.7
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 3.0e-10 68.9 102 48.0
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 4.0e-10 68.6 118 39.0
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 5.2e-10 68.2 84 46.4
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 8.8e-10 67.4 87 51.7
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 1.2e-09 67.0 113 35.4
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 9.8e-09 63.9 103 39.8
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 1.3e-08 63.5 78 47.4
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 3.7e-08 62.0 71 49.3
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 3.7e-08 62.0 71 49.3
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 6.3e-08 61.2 112 40.2
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 2.4e-07 59.3 51 58.8
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 1.2e-06 57.0 48 62.5
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 3.5e-06 55.5 44 63.6
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 3.5e-06 55.5 44 63.6
Migut.M00865 Erythranthe guttata HOM05D023068 ORTHO05D009506 4.5e-06 55.1 105 39.0


User provided reference genes

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