Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0034681 Rosa chinensis HOM05D006584 ORTHO05D007640 4.5e-23 110.2 47 100.0
RcHm_v2.0_Chr4g0398391 Rosa chinensis HOM05D006584 ORTHO05D007640 3.4e-10 67.4 32 87.5
FAN15G2290 Fragaria x ananassa HOM05D001585 ORTHO05D001677 4.1e-08 60.5 32 78.1
RcHm_v2.0_Chr6g0310741 Rosa chinensis HOM05D006584 ORTHO05D007640 4.1e-08 60.5 32 78.1
COL.COLO4_21049 Corchorus olitorius HOM05D006584 ORTHO05D007640 7.0e-08 59.7 32 75.0
FAN20G0896 Fragaria x ananassa HOM05D006584 ORTHO05D007640 1.2e-07 58.9 32 75.0
Duzib150G0622 Durio zibethinus HOM05D006584 ORTHO05D007640 2.0e-07 58.2 32 71.9
FvH4_2g32010 Fragaria vesca HOM05D006584 ORTHO05D007640 3.5e-07 57.4 32 75.0
Aqoxy7G01236 Aquilegia oxysepala HOM05D006584 ORTHO05D007640 4.5e-07 57.0 32 68.8
Cpa.g.sc7.166 Carica papaya HOM05D006584 ORTHO05D007640 4.5e-07 57.0 32 75.0
CANSAT25G1083 Cannabis sativa HOM05D006584 ORTHO05D007640 7.7e-07 56.2 32 65.6
Hma1.2p1_0482F.1_g162540 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 7.7e-07 56.2 32 71.9
Hma1.2p1_0482F.1_g162550 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 7.7e-07 56.2 32 71.9
QL02p001321 Quercus lobata HOM05D006584 ORTHO05D007640 7.7e-07 56.2 32 68.8
Lsat_1_v5_gn_3_24361 Lactuca sativa HOM05D006584 ORTHO05D007640 1.0e-06 55.8 32 65.6
Gohir.D13G193900 Gossypium hirsutum HOM05D006584 ORTHO05D007640 1.3e-06 55.5 32 71.9
Gorai.013G220000 Gossypium raimondii HOM05D006584 ORTHO05D007640 1.3e-06 55.5 32 71.9
GSVIVG01035364001 Vitis vinifera HOM05D006584 ORTHO05D007640 1.3e-06 55.5 32 68.8
DCAR_004431 Daucus carota HOM05D006584 ORTHO05D007640 2.2e-06 54.7 32 65.6
arahy.Tifrunner.gnm1.ann1.3J87F1 Arachis hypogaea HOM05D006584 ORTHO05D007640 2.9e-06 54.3 32 71.9
arahy.Tifrunner.gnm1.ann1.U8SEXI Arachis hypogaea HOM05D006584 ORTHO05D007640 2.9e-06 54.3 32 71.9
Ca_13172_v3 Cicer arietinum L. HOM05D006584 ORTHO05D007640 2.9e-06 54.3 32 71.9
Ca_14355_v3 Cicer arietinum L. HOM05D000495 ORTHO05D007640 2.9e-06 54.3 32 71.9
PGR031G2613 Punica granatum HOM05D006584 ORTHO05D007640 2.9e-06 54.3 32 68.8
Glyma.17G229600 Glycine max HOM05D006584 ORTHO05D007640 3.8e-06 53.9 32 71.9
HanXRQChr17g0538441 Helianthus annuus HOM05D006584 ORTHO05D007640 3.8e-06 53.9 32 62.5
Lj5g0009338 Lotus japonicus HOM05D006584 ORTHO05D007640 3.8e-06 53.9 32 71.9
Manes.03G047600 Manihot esculenta HOM05D006584 ORTHO05D007640 3.8e-06 53.9 32 71.9
Phvul.001G034500 Phaseolus vulgaris HOM05D006584 ORTHO05D007640 3.8e-06 53.9 32 71.9
Thecc.09G053100 Theobroma cacao HOM05D006584 ORTHO05D007640 5.0e-06 53.5 32 68.8
EL10Ac2g03896 Beta vulgaris HOM05D006584 ORTHO05D007640 6.5e-06 53.1 32 68.8
Cc08_g10530 Coffea canephora HOM05D006584 ORTHO05D007640 6.5e-06 53.1 32 68.8
Lj8A542T15 Lonicera japonica HOM05D006584 ORTHO05D007640 6.5e-06 53.1 32 65.6
Lj8A547G7 Lonicera japonica HOM05D006584 ORTHO05D007640 6.5e-06 53.1 32 65.6
AUR62009159 Chenopodium quinoa HOM05D006584 ORTHO05D007640 8.5e-06 52.8 32 68.8
Gohir.A13G187100 Gossypium hirsutum HOM05D006584 ORTHO05D007640 8.5e-06 52.8 32 68.8
Sc23g0004490 Simmondsia chinensis HOM05D006584 ORTHO05D007640 8.5e-06 52.8 32 65.6
VMungo0647G2476 Vigna mungo HOM05D006584 ORTHO05D007640 8.5e-06 52.8 32 68.8


User provided reference genes

Program Settings