Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 4.3e-167 591.3 306 100.0
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.3e-151 538.5 307 92.5
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.4e-151 537.3 283 94.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 6.3e-150 534.3 306 87.9
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 3.5e-148 528.5 288 90.6
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.3e-147 526.6 300 87.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.7e-147 526.2 282 94.3
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 9.7e-143 510.4 306 84.3
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.1e-141 506.9 306 84.0
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 5.9e-140 501.1 281 89.7
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.3e-139 500.0 306 84.0
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.9e-139 498.8 306 82.0
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.8e-139 498.4 288 84.7
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.8e-139 498.4 288 87.2
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 5.0e-139 498.0 285 85.6
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 5.0e-139 498.0 286 85.3
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 5.0e-139 498.0 285 85.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 5.0e-139 498.0 285 85.6
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 5.0e-139 498.0 301 82.1
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 6.5e-139 497.7 287 86.1
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 8.5e-139 497.3 301 85.4
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.1e-138 496.9 288 86.5
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.5e-138 496.5 282 86.9
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.5e-138 496.5 288 84.4
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.9e-138 496.1 285 85.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.9e-138 496.1 305 84.3
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.9e-138 496.1 302 83.1
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.5e-138 495.7 282 86.9
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 2.5e-138 495.7 301 85.4
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 3.2e-138 495.4 306 81.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.2e-138 495.4 308 81.2
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.5e-138 494.6 287 85.4
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 7.2e-138 494.2 302 81.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 9.4e-138 493.8 288 84.7
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 9.4e-138 493.8 286 84.3
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.6e-137 493.0 285 85.6
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.1e-137 492.7 289 83.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.6e-137 491.9 288 84.4
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.6e-137 491.9 283 86.2
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.6e-137 491.9 302 83.8
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 6.1e-137 491.1 289 85.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 6.1e-137 491.1 307 80.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.0e-136 490.3 281 85.4
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.8e-136 489.6 280 86.1
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.0e-136 488.8 287 82.9
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 4.0e-136 488.4 302 83.1
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.0e-136 488.4 301 81.4
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 5.2e-136 488.0 299 83.9
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.2e-136 488.0 308 81.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 6.8e-136 487.6 282 85.1
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.8e-136 487.6 308 81.2
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 8.8e-136 487.3 296 82.8
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 8.8e-136 487.3 302 81.1
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.2e-135 486.9 309 80.9
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.2e-135 486.9 289 85.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 2.6e-135 485.7 285 83.5
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.4e-135 485.3 302 81.1
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 4.4e-135 485.0 277 85.2
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 7.5e-135 484.2 310 80.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 7.5e-135 484.2 280 85.0
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.5e-135 484.2 304 79.9
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 9.8e-135 483.8 304 81.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-134 483.4 302 82.5
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.3e-134 483.4 304 79.9
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 2.2e-134 482.6 302 82.5
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.7e-134 481.9 282 85.8
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 4.8e-134 481.5 302 79.8
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.3e-134 480.7 277 89.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.1e-133 480.3 281 84.3
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.4e-133 479.9 307 78.8
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.1e-133 478.8 288 81.9
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.1e-133 478.4 308 79.9
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.1e-133 478.4 280 83.2
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.4e-133 478.0 279 83.5
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 7.0e-133 477.6 282 84.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.0e-132 476.1 302 79.8
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 2.7e-132 475.7 278 83.8
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 5.9e-132 474.6 306 80.1
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 5.9e-132 474.6 288 83.0
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.3e-131 472.6 280 82.5
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.9e-131 472.2 308 77.9
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 5.0e-131 471.5 288 82.6
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.5e-130 469.9 304 79.9
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.9e-130 469.5 288 82.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.3e-130 468.8 314 78.3
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.2e-129 466.8 282 82.6
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.2e-129 466.8 281 81.9
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 6.1e-129 464.5 290 78.3
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.4e-128 463.4 288 80.9
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 2.3e-128 462.6 306 80.1
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.0e-128 461.8 308 76.3
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 6.8e-128 461.1 306 75.8
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.0e-127 459.5 280 82.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.0e-127 459.5 281 81.1
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 3.4e-127 458.8 304 76.6
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.4e-127 458.4 315 75.2
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.8e-127 457.2 282 81.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.7e-126 456.4 289 78.5
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.7e-126 456.4 286 80.8
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 6.3e-126 454.5 309 76.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.8e-125 453.0 285 79.3
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.8e-125 453.0 304 74.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.1e-125 452.2 289 78.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 5.4e-125 451.4 265 83.8
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 7.0e-125 451.1 299 76.3
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 9.2e-125 450.7 300 77.0
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 7.8e-124 447.6 285 78.9
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.7e-123 446.4 313 74.8
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-122 443.4 279 80.3
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.5e-122 443.4 280 78.6
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.5e-122 443.4 285 78.6
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 4.3e-122 441.8 310 74.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 7.3e-122 441.0 287 78.7
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.6e-121 439.9 388 64.4
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 3.6e-121 438.7 293 75.8
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 3.1e-120 435.6 301 72.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 5.8e-119 431.4 302 72.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.7e-118 428.7 279 76.0
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.9e-118 428.3 290 75.9
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.1e-117 427.2 277 76.9
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 7.0e-117 424.5 293 74.7
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.0e-115 420.6 271 79.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.2e-113 413.7 244 88.9
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.0e-111 406.4 221 90.5
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.1e-109 400.6 221 88.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.4e-109 400.2 249 79.9
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 3.2e-109 399.1 280 73.9
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.6e-108 396.7 287 69.0
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.3e-107 393.7 259 76.4
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.6e-107 391.3 218 87.6
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.6e-107 391.3 218 87.6
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 6.2e-105 384.8 250 73.2
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.1e-104 384.0 266 68.4
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 8.3e-102 374.4 251 71.7
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.2e-101 372.5 314 64.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.0e-99 365.9 255 68.6
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 5.8e-95 351.7 200 85.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.6e-91 338.2 213 80.8
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.1e-88 330.9 182 89.0
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.2e-87 327.4 182 86.3
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 4.9e-86 322.0 208 79.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.4e-80 303.9 174 85.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.2e-76 290.8 188 78.2
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.3e-75 286.6 221 70.6
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 8.4e-70 268.1 152 86.2
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.8e-65 253.1 194 65.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 7.1e-61 238.4 146 80.1
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.7e-57 226.1 209 61.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 5.3e-48 195.7 245 47.8
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 5.5e-45 185.7 119 74.8
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.5e-42 177.6 158 60.1
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.4e-42 176.0 136 68.4
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.8e-41 173.3 179 57.0
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-38 164.9 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 4.7e-36 156.0 86 84.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 9.7e-34 148.3 96 76.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.9e-30 136.7 298 33.2
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 5.0e-30 136.0 101 72.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.1e-28 130.6 88 73.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 5.2e-27 125.9 191 44.5
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 5.7e-26 122.5 170 41.2
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 7.7e-23 112.1 66 83.3
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 7.7e-23 112.1 66 83.3
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.8e-19 99.0 62 82.3
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.8e-19 99.0 62 82.3
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 7.0e-16 89.0 53 77.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 1.3e-14 84.7 158 37.3
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-14 82.8 85 51.8
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 7.2e-13 79.0 79 51.9
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-11 75.1 92 46.7
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.4e-11 74.7 85 52.9
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.9e-11 72.0 62 59.7
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.2e-10 71.6 59 61.0
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-10 71.2 103 41.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.7e-09 67.8 110 40.0
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.7e-07 60.5 43 72.1
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.3e-06 58.2 57 47.4
MCO17G054 Micromonas commoda HOM05D003815 ORTHO05D270498 5.0e-06 56.2 148 30.4
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.6e-06 55.8 34 76.5
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 8.6e-06 55.5 53 56.6


User provided reference genes

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