Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 3.3e-250 867.8 421 100.0
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 4.2e-237 824.3 421 94.1
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.2e-230 802.0 415 93.7
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.7e-228 795.0 426 91.1
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 7.7e-223 776.9 421 89.8
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 7.2e-221 770.4 419 86.9
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 2.6e-218 761.9 419 85.0
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.6e-215 751.9 415 89.4
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 6.5e-214 747.3 421 82.4
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 7.2e-213 743.8 426 82.4
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 1.2e-212 743.0 423 81.3
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 6.7e-211 737.3 423 79.7
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 4.4e-210 734.6 418 81.3
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 5.7e-210 734.2 423 79.4
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 3.7e-209 731.5 423 79.2
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 1.1e-208 729.9 423 81.6
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 1.1e-208 729.9 424 80.2
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 1.8e-208 729.2 423 79.2
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 5.3e-208 727.6 416 81.0
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 7.0e-208 727.2 411 82.0
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 1.3e-206 723.0 420 82.6
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 6.5e-206 720.7 423 79.9
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 1.1e-205 719.9 427 78.7
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 9.4e-205 716.8 416 79.1
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 1.6e-204 716.1 421 77.7
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 6.1e-204 714.1 421 77.2
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 6.1e-204 714.1 419 77.8
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 8.0e-204 713.8 413 79.4
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 2.3e-203 712.2 417 77.7
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 1.5e-202 709.5 412 82.0
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 2.0e-202 709.1 424 77.6
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 7.5e-202 707.2 425 76.5
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 2.2e-201 705.7 425 77.2
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 2.8e-201 705.3 425 76.9
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 4.8e-201 704.5 417 76.5
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 1.8e-200 702.6 408 79.2
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 2.4e-200 702.2 420 77.6
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 1.2e-199 699.9 421 77.2
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 2.0e-199 699.1 423 76.4
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 7.7e-199 697.2 419 75.4
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 7.7e-199 697.2 419 75.2
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 1.7e-198 696.0 417 75.5
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 2.9e-198 695.3 405 79.5
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 5.0e-198 694.5 417 76.0
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 8.6e-198 693.7 417 76.3
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 1.5e-197 693.0 417 75.8
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 1.5e-197 693.0 417 75.8
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 2.5e-197 692.2 417 75.8
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 4.2e-197 691.4 421 75.8
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 5.5e-197 691.0 417 75.5
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 7.2e-197 690.6 417 75.5
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 1.2e-196 689.9 418 75.8
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 6.1e-196 687.6 417 75.3
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 8.0e-196 687.2 426 75.1
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 1.0e-195 686.8 417 75.1
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 5.2e-195 684.5 417 74.3
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 5.2e-195 684.5 421 75.3
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 3.4e-194 681.8 401 78.1
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 5.7e-194 681.0 417 74.6
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 1.1e-192 676.8 423 74.7
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 3.1e-192 675.2 419 71.8
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 9.2e-192 673.7 406 75.6
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 2.7e-191 672.2 418 73.4
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 7.8e-191 670.6 421 73.6
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 1.0e-190 670.2 540 62.8
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 1.0e-190 670.2 421 75.5
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 1.9e-189 666.0 421 73.9
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 1.6e-188 662.9 411 73.7
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 3.6e-188 661.8 450 69.8
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 3.0e-187 658.7 419 73.5
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 3.0e-187 658.7 425 73.4
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 3.4e-186 655.2 396 75.5
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 3.4e-186 655.2 419 70.4
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 5.7e-186 654.4 425 72.7
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 1.1e-184 650.2 397 74.1
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 1.3e-182 643.3 417 70.3
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 3.0e-182 642.1 420 68.8
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 2.5e-181 639.0 413 70.0
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 3.6e-180 635.2 430 69.1
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 2.9e-177 625.5 462 65.4
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 4.1e-176 621.7 409 69.9
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 2.3e-174 615.9 412 70.6
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 1.1e-171 607.1 419 65.9
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 2.0e-170 602.8 456 65.4
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 7.5e-170 600.9 414 69.1
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 3.9e-158 562.0 393 67.2
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 2.8e-156 555.8 413 65.4
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 9.0e-155 550.8 423 62.2
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 1.2e-154 550.4 312 80.4
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 9.3e-152 540.8 364 70.3
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 1.3e-150 537.0 387 65.4
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 6.2e-148 528.1 313 75.4
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 1.8e-147 526.6 375 70.7
Cpa.g.sc80.77 Carica papaya HOM05D006845 ORTHO05D009300 8.1e-140 501.1 423 61.9
SEGI_13558 Sequoiadendron giganteum HOM05D006845 ORTHO05D009300 6.1e-95 352.1 346 45.4
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 8.8e-94 348.2 207 75.4
Cc05_g11920 Coffea canephora HOM05D006845 ORTHO05D009300 4.8e-92 342.4 204 77.0
BcaB07g33336 Brassica carinata HOM05D006845 ORTHO05D009300 6.3e-92 342.0 197 78.7
Pp3c1_32740 Physcomitrium patens HOM05D006845 ORTHO05D009300 6.8e-86 322.0 342 45.6
AagrBONN_evm.TU.Sc2ySwM_344.572 Anthoceros agrestis HOM05D006845 ORTHO05D009300 5.9e-82 308.9 344 42.2
Mapoly0037s0133 Marchantia polymorpha HOM05D006845 ORTHO05D009300 1.6e-71 274.2 361 36.3
SMO143G0137 Selaginella moellendorffii HOM05D006845 ORTHO05D009300 5.2e-62 242.7 280 40.7
unitig_899.g15568 Utricularia gibba HOM05D006845 ORTHO05D009300 3.4e-45 186.8 106 76.4
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 1.5e-37 161.4 103 68.0
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 9.9e-37 158.7 85 83.5
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-35 155.2 106 65.1
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-35 155.2 106 65.1
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 5.4e-35 152.9 103 65.0
BcaB04g16942 Brassica carinata HOM05D006845 ORTHO05D009300 3.0e-33 147.1 139 58.3
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 3.9e-17 93.6 49 87.8
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 2.5e-16 90.9 49 85.7
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 4.3e-16 90.1 50 82.0
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 6.9e-14 82.8 48 81.2
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 7.9e-10 69.3 63 52.4
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 8.7e-09 65.9 45 64.4
FAN21G2570 Fragaria x ananassa HOM05D011847 ORTHO05D013847 3.1e-06 57.4 36 72.2


User provided reference genes

Program Settings